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[184718_at]

Description F26F12.2 /REP_DB=WormBase Gene ID /WP=CE07147 /TR=Q19812 /GB=AAC25889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 4.5
(-3)
A 		12.6
(3)
A 		8.5
(-0)
A 		5.5
(-2.3)
A 		8
B 4.3
(-2.9)
A 		3.6
(-3)
A 		10.5
(-1.8)
A 		38.6
(3)
A 		35
C 7.8
(-2.7)
A 		36.3
(3)
A 		6.2
(-3)
A 		34.8
(2.7)
A 		30
avr 5.5
(-3) 		17.5
(0.5) 		8.4
(-2.2) 		26.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 8.3
(-0.6)
A 		13.4
(2.5)
A 		6.4
(-1.7)
A 		4.3
(-3)
A 		9.9
(0.4)
A 		14.2
(3)
A 		10
B 27.4
(1.9)
A 		11
(-2.8)
A 		31.1
(3)
A 		10.2
(-3)
A 		11.7
(-2.6)
A 		10.6
(-2.9)
A 		21
C 5.2
(-2.8)
A 		57.6
(3)
A 		3.6
(-3)
A 		11.4
(-2.1)
A 		26.7
(-0.4)
A 		13.8
(-1.9)
A 		54
avr 13.6
(-1.4) 		27.3
(3) 		13.7
(-1.4) 		8.6
(-3) 		16.1
(-0.6) 		12.9
(-1.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-0.5)
A 		2.7
(3)
A 		2.2
(1.4)
A 		0.8
(-3)
A 		2
B 1.4
(-2.6)
A 		0.9
(-3)
A 		2.4
(-1.8)
A 		8.2
(3)
A 		7
C 2.6
(-2.7)
A 		10.4
(3)
A 		2.2
(-3)
A 		5.9
(-0.3)
A 		8
avr 1.9
(-3) 		4.7
(2.4) 		2.3
(-2.2) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		4.8
(3)
A 		1.4
(-2.5)
A 		1.1
(-3)
A 		3
(0.1)
A 		3.5
(0.9)
A 		4
B 9.5
(3)
A 		3.6
(-2.2)
A 		7.5
(1.2)
A 		2.7
(-3)
A 		4.7
(-1.2)
A 		4
(-1.9)
A 		7
C 1.9
(-2.6)
A 		17.6
(3)
A 		0.9
(-3)
A 		2.3
(-2.5)
A 		8.6
(-0.2)
A 		4.6
(-1.7)
A 		17
avr 4.3
(-0.9) 		8.7
(3) 		3.3
(-1.8) 		2
(-3) 		5.4
(0) 		4
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12113
Sequence Type Exemplar sequence
Representative Public ID F26F12.2 NCBI
Target Description F26F12.2 /REP_DB=WormBase Gene ID /WP=CE07147 /TR=Q19812 /GB=AAC25889.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072125 NCBI Caenorhabditis elegans F26F12.2 (F26F12.2) mRNA, complete cds. 11/11 None
SNAP00000007007 ENSEMBL cdna:SNAP chromosome:CEL140:V:5840231:5841181:-1 11/11 None
GENEFINDER00000007016 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5840231:5841181:-1 11/11 None
F26F12.2 ENSEMBL cdna:known chromosome:CEL140:V:5840231:5841181:-1 gene:F26F12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5840230-5841181(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F12.2
Entrez Gene 184992 Entrez gene
SwissProt Q19812 EMBL-EBI
WormBase CE07147 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504526 F26F12.2 [Caenorhabditis elegans] gb|AAC25889.1| Hypothetical protein F26F12.2 [Caenorhabditis elegans] 1.0E-134
blast CAE74568 Hypothetical protein CBG22332 [Caenorhabditis briggsae] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:184718_AT
tgcgagtctgttacgatgcacctaccaatcaatcgtcacttacttacaccttgacttggg
ataagaatatttcggaagaatatgaatttgaaaaggctttgttggaggagaagctcattc
aaaattataataatctcgcacgcccgaaactcaataatctggatgctccaaaaaacgagc
ccaaatctcccattcaatctttgaactacgcagtaccaacgaagaatgctctcgagatga
actacccagcgaaagacgaaaagatcacagttaaaatggttattctcacagctgctaagg
attatggggttttctatgatcactgcaaagttcaatcgaagttttctaaaagtattatta
atccaatttccaaaatgttgttcaacaatggaaaagatgaggctgactatttgaaaactg
gagaactctactacgcggagctacatcctgattttgaacgaaagatgtataaaatcgaga
aacctgaatacaagaaattgaagttgaacaatataccgaaaatatacaatgatattgctc
tcgtattggatttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGAGTCTGTTACGATGCACCTAC 548 583 170 Antisense
CCTACCAATCAATCGTCACTTACTT 367 265 190 Antisense
TCACTTACTTACACCTTGACTTGGG 251 591 205 Antisense
AATTATAATAATCTCGCACGCCCGA 86 175 292 Antisense
GCACGCCCGAAACTCAATAATCTGG 433 313 307 Antisense
GCTCTCGAGATGAACTACCCAGCGA 117 301 397 Antisense
AAATGGTTATTCTCACAGCTGCTAA 324 121 443 Antisense
ATGGGGTTTTCTATGATCACTGCAA 369 51 473 Antisense
GGAGAACTCTACTACGCGGAGCTAC 652 517 589 Antisense
GCGGAGCTACATCCTGATTTTGAAC 664 293 604 Antisense
GATATTGCTCTCGTATTGGATTTAG 545 427 700 Antisense
Sequence Source Affymetrix Proprietary Database