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[184717_at]

Description C49G7.11 /REP_DB=WormBase Gene ID /WP=CE08869 /TR=O16228 /GB=AAK18904.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 2.4
(-3)
A 		11.4
(-1.9)
A 		4.2
(-2.8)
A 		49.5
(3)
A 		47
B 3
(-3)
A 		5.8
(-2.6)
A 		9.3
(-2.2)
A 		47.6
(3)
A 		45
C 2.9
(-3)
A 		5.8
(-2.7)
A 		4.4
(-2.9)
A 		66.7
(3)
A 		64
avr 2.8
(-3) 		7.7
(-2.4) 		6
(-2.6) 		54.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 4.4
(-3)
A 		20.1
(-2.7)
A 		76.2
(-1.8)
A 		128.7
(-0.9)
P 		271.7
(1.5)
P 		358.9
(3)
P 		355
B 2.5
(-3)
A 		5.1
(-3)
A 		18.2
(-2.8)
A 		125.1
(-1.3)
M 		367.6
(2.1)
P 		433.3
(3)
P 		431
C 3.2
(-3)
A 		9.6
(-2.9)
A 		24.8
(-2.7)
A 		115.8
(-1.7)
A 		261.4
(0)
P 		519.1
(3)
P 		516
avr 3.4
(-3) 		11.6
(-2.9) 		39.7
(-2.5) 		123.2
(-1.3) 		300.2
(1.1) 		437.1
(3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.9
(-3)
A 		2.5
(-1.5)
A 		1.1
(-2.8)
A 		7.2
(3)
A 		6
B 0.9
(-3)
A 		1.4
(-2.7)
A 		2.2
(-2.2)
A 		10.1
(3)
A 		9
C 1
(-3)
A 		1.7
(-2.6)
A 		1.5
(-2.7)
A 		11.3
(3)
A 		10
avr 0.9
(-3) 		1.9
(-2.3) 		1.6
(-2.5) 		9.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 0.8
(-3)
A 		7.1
(-2.6)
A 		16.6
(-1.9)
A 		32.6
(-0.8)
P 		82
(2.6)
P 		87.4
(3)
P 		87
B 0.9
(-3)
A 		1.7
(-3)
A 		4.4
(-2.9)
A 		33.1
(-1.8)
M 		149.3
(2.5)
P 		161.6
(3)
P 		161
C 1.2
(-3)
A 		2.9
(-2.9)
A 		6.3
(-2.8)
A 		23.3
(-2.2)
A 		84.6
(-0.1)
P 		173.8
(3)
P 		173
avr 1
(-3) 		3.9
(-2.9) 		9.1
(-2.7) 		29.7
(-1.8) 		105.3
(1.5) 		140.9
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15262
Sequence Type Exemplar sequence
Representative Public ID C49G7.11 NCBI
Target Description C49G7.11 /REP_DB=WormBase Gene ID /WP=CE08869 /TR=O16228 /GB=AAK18904.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071731 NCBI Caenorhabditis elegans C49G7.11 (C49G7.11) mRNA, complete cds. 11/11 None
SNAP00000008210 ENSEMBL cdna:SNAP chromosome:CEL140:V:4049290:4054922:-1 11/11 None
GENEFINDER00000008222 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4054004:4054922:-1 11/11 None
C49G7.11 ENSEMBL cdna:known chromosome:CEL140:V:4054004:4054922:-1 gene:C49G7.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4054003-4054922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G7.11
Entrez Gene 183625 Entrez gene
SwissProt O16228 EMBL-EBI
WormBase CE08869 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257216_AT 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative at
Protein Similarities
Method ID Description E-Value
blast AAK18904 Hypothetical protein C49G7.11 [Caenorhabditis elegans] ref|NP_504132.1| C49G7.11 [Caenorhabditis elegans] 1.0E-101
blast AAK18904 Hypothetical protein C49G7.11 [Caenorhabditis elegans] ref|NP_504132.1| C49G7.11 [Caenorhabditis elegans] 1.0E-100
blast CAE62836 Hypothetical protein CBG07015 [Caenorhabditis briggsae] 8.0E-64
blast CAE62836 Hypothetical protein CBG07015 [Caenorhabditis briggsae] 2.0E-63
blast AAB37889 Hypothetical protein B0432.2 [Caenorhabditis elegans] ref|NP_493696.1| B0432.2 [Caenorhabditis elegans] 4.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR002818 EMBL-EBI ThiJ/PfpI 1.3E-48
Sequence
Target Sequence 
>C. ELEGANS:184717_AT
aagagtgctttgatccttttgccaccagaagacgccgaagaaatcgaggttattgtgacc
ggagatgtgttggtccgtggaggtttacaagttctatatgctggaagtagtactgaacct
gtcaaatgtgccaaaggagctcgtattgttccggacgtagctctcaaggatgtgaagaac
aagacattcgacatcataattatcccaggtggacccggatgtagcaaactggcagagtgc
ccagttatcggtgaattgctgaagacccaagtcaaatctggaggtctaattggtgcaatt
tgcgccggtccaacagttcttcttgcgcatggaattgtggcagagcgtgtcacttgtcac
tatactgtcaaggataaaatgacagaaggaggctacaaatatttggatgacaacgttgtt
atcagcgacagagttatcacttctaaaggacctggaactgctttcgagtttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGTGCTTTGATCCTTTTGCCAC 72 155 25 Antisense
TTTTGCCACCAGAAGACGCCGAAGA 42 677 41 Antisense
TGGTCCGTGGAGGTTTACAAGTTCT 275 551 95 Antisense
AAAGGAGCTCGTATTGTTCCGGACG 82 121 157 Antisense
GTTCCGGACGTAGCTCTCAAGGATG 588 439 172 Antisense
TATCCCAGGTGGACCCGGATGTAGC 244 657 225 Antisense
GAGTGCCCAGTTATCGGTGAATTGC 548 399 259 Antisense
TAATTGGTGCAATTTGCGCCGGTCC 604 633 311 Antisense
CAACAGTTCTTCTTGCGCATGGAAT 15 189 335 Antisense
GTGGCAGAGCGTGTCACTTGTCACT 516 489 361 Antisense
GACCTGGAACTGCTTTCGAGTTTGC 294 383 473 Antisense
Sequence Source Affymetrix Proprietary Database