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[184716_at]

Description Y46G5A.11 /REP_DB=WormBase Gene ID /WP=CE24289 /TR=Q9U2F7 /GB=CAB60354.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 92      6grp_total > 98      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 246.6
(3)
P 		94.5
(-3)
P 		139.5
(-1.2)
P 		187.6
(0.7)
P 		152
B 283.2
(3)
P 		152.6
(-1.4)
P 		107.1
(-3)
P 		138.1
(-1.9)
P 		176
C 307.9
(3)
P 		143.3
(-1.8)
P 		103.4
(-3)
P 		206.8
(0)
P 		205
avr 279.2
(3) 		130.1
(-2.5) 		116.7
(-3) 		177.5
(-0.8) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 579
1 2 3 4 5 6 range
A 249.9
(-1.1)
P 		169
(-2)
P 		71
(-3)
P 		177.8
(-1.9)
P 		615
(2.7)
P 		644.2
(3)
P 		573
B 186.8
(-1.9)
P 		127
(-2.6)
P 		87.4
(-3)
P 		160.8
(-2.2)
P 		471
(1.2)
P 		638.9
(3)
P 		552
C 162.6
(-2.4)
P 		157.2
(-2.4)
P 		103.8
(-3)
P 		148.7
(-2.5)
P 		650
(3)
P 		569.9
(2.1)
P 		546
avr 199.8
(-1.7) 		151.1
(-2.3) 		87.4
(-3) 		162.4
(-2.2) 		578.7
(2.6) 		617.7
(3) 		530
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 89.8
(3)
P 		20.5
(-3)
P 		36.5
(-1.6)
P 		27.5
(-2.4)
P 		69
B 90.3
(3)
P 		37.7
(-1.8)
P 		24.8
(-3)
P 		29.4
(-2.6)
P 		66
C 101.9
(3)
P 		41.2
(-2.4)
P 		36
(-2.9)
P 		34.9
(-3)
P 		67
avr 94
(3) 		33.1
(-2.8) 		32.4
(-2.8) 		30.6
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 46.1
(-1.9)
P 		60.1
(-1.4)
P 		15.5
(-3)
P 		45.1
(-2)
P 		185.6
(3)
P 		156.9
(2)
P 		170
B 65
(-1.8)
P 		42.3
(-2.4)
P 		21.2
(-3)
P 		42.6
(-2.4)
P 		191.4
(1.7)
P 		238.2
(3)
P 		217
C 60.3
(-1.9)
P 		48
(-2.3)
P 		26.4
(-3)
P 		29.9
(-2.9)
P 		210.3
(3)
P 		190.8
(2.4)
P 		184
avr 57.1
(-1.8) 		50.1
(-2) 		21
(-3) 		39.2
(-2.4) 		195.8
(3) 		195.3
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3113
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.11 NCBI
Target Description Y46G5A.11 /REP_DB=WormBase Gene ID /WP=CE24289 /TR=Q9U2F7 /GB=CAB60354.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064314 NCBI Caenorhabditis elegans Y46G5A.10 (Y46G5A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000039021 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12756249:12767045:1 9/11 None
Y46G5A.10 ENSEMBL cdna:known chromosome:CEL140:II:12760693:12767114:1 gene:Y46G5A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038991 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12764915-12766971(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.10
Entrez Gene 174907 Entrez gene
SwissProt Q9U2D6 EMBL-EBI
WormBase CE37941 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60376 Hypothetical protein Y46G5A.10 [Caenorhabditis elegans] ref|NP_496715.3| Y46G5A.10 [Caenorhabditis elegans] 0.0
blast CAE63448 Hypothetical protein CBG07907 [Caenorhabditis briggsae] 1.0E-163
blast CAB60353 Hypothetical protein Y46G5A.8 [Caenorhabditis elegans] ref|NP_496714.1| Y46G5A.8 [Caenorhabditis elegans] 5.0E-81
blast CAE63448 Hypothetical protein CBG07907 [Caenorhabditis briggsae] 8.0E-81
blast CAE63560 Hypothetical protein CBG08047 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.8E-9
Sequence
Target Sequence 
>C. ELEGANS:184716_AT
gtcatcatgttcattccgagacccctgaacttccatatactagagggatctccaagactc
cgagtgttcgagaatacaatgtgaagcgggaaggtcagagatcgccaagcaggtctcata
gatctgaaagaagcccatcagaggtccgtatcccggtgacaactacacatactcgcccga
ttgcaaaacgccaaagcccggaggagctggattatggaagattcgcggataaaagtcagc
agaaccgatttccgggggatcatcaggctagggaggaggacttaccgtataccaggggaa
tttccaagactcctagcaatcaggattccaggtcggagagaactccgtgctcggatattc
acattccttacaataaccctgaaaaagagaggtacagtagcaaaacctaccggtggagaa
gtcaaggtacctatcacgtggtgtcagtaccccacataccccatctgaagtgcacattcc
atacaataatccagagaaagaacgagcctaccaacaatcgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATCATGTTCATTCCGAGACCCC 229 467 155 Antisense
GACCCCTGAACTTCCATATACTAGA 537 381 174 Antisense
GATCTCCAAGACTCCGAGTGTTCGA 304 419 201 Antisense
AAGAAGCCCATCAGAGGTCCGTATC 507 151 282 Antisense
TCCGTATCCCGGTGACAACTACACA 311 595 299 Antisense
TACACATACTCGCCCGATTGCAAAA 10 643 318 Antisense
GGAATTTCCAAGACTCCTAGCAATC 688 531 451 Antisense
GTGCTCGGATATTCACATTCCTTAC 683 479 501 Antisense
ATCACGTGGTGTCAGTACCCCACAT 35 23 587 Antisense
ACATACCCCATCTGAAGTGCACATT 460 105 608 Antisense
AGAACGAGCCTACCAACAATCGCAC 304 73 653 Antisense
Sequence Source Affymetrix Proprietary Database