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[184715_at]

Description C10H11.8 /REP_DB=WormBase Gene ID /WP=CE08097 /TR=P91040 /GB=AAB42347.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 09      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 178
(3)
P 		144.2
(0.3)
P 		104.2
(-3)
P 		139.6
(-0.1)
P 		74
B 146.3
(3)
P 		136.5
(1.6)
P 		103.6
(-3)
P 		118.5
(-0.9)
P 		43
C 148
(0.5)
P 		132.8
(-0.3)
M 		77.5
(-3)
P 		200.1
(3)
P 		123
avr 157.4
(3) 		137.8
(1.1) 		95.1
(-3) 		152.7
(2.5) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 134.7
(0.6)
P 		71.4
(-3)
P 		160.5
(2.1)
P 		176.4
(3)
P 		110.8
(-0.7)
P 		108.7
(-0.9)
P 		105
B 167.4
(3)
P 		138.5
(0.7)
P 		127.3
(-0.2)
P 		115.2
(-1.2)
P 		106.8
(-1.9)
P 		92.8
(-3)
P 		75
C 197.9
(3)
P 		130.4
(-0.7)
P 		95.1
(-2.6)
P 		174.9
(1.7)
P 		87.7
(-3)
P 		115.7
(-1.5)
P 		110
avr 166.7
(3) 		113.4
(-1.9) 		127.6
(-0.6) 		155.5
(2) 		101.8
(-3) 		105.7
(-2.6) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 64.8
(3)
P 		31.3
(-1.5)
P 		27.2
(-2.1)
P 		20.4
(-3)
P 		44
B 46.7
(3)
P 		33.7
(-0.4)
P 		24
(-3)
P 		25.3
(-2.7)
P 		23
C 49
(3)
P 		38.2
(0.1)
M 		27
(-3)
P 		33.7
(-1.2)
P 		22
avr 53.5
(3) 		34.4
(-1.2) 		26.1
(-3) 		26.5
(-2.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 24.8
(-3)
P 		25.4
(-2.8)
P 		34.9
(0)
P 		44.7
(3)
P 		33.4
(-0.4)
P 		26.5
(-2.5)
P 		20
B 58.2
(3)
P 		46.1
(0.4)
P 		30.9
(-2.9)
P 		30.5
(-3)
P 		43.4
(-0.2)
P 		34.6
(-2.1)
P 		28
C 73.3
(3)
P 		39.8
(-1.1)
P 		24.2
(-3)
P 		35.2
(-1.7)
P 		28.4
(-2.5)
P 		38.7
(-1.2)
P 		49
avr 52.1
(3) 		37.1
(-1.1) 		30
(-3) 		36.8
(-1.2) 		35.1
(-1.6) 		33.3
(-2.1) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.676
Sequence Type Exemplar sequence
Representative Public ID C10H11.8 NCBI
Target Description C10H11.8 /REP_DB=WormBase Gene ID /WP=CE08097 /TR=P91040 /GB=AAB42347.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059038 NCBI Caenorhabditis elegans C10H11.8 (C10H11.8) mRNA, complete cds. 11/11 None
SNAP00000015955 ENSEMBL cdna:SNAP chromosome:CEL140:I:4735757:4738076:-1 11/11 None
GENEFINDER00000015963 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4735757:4738841:-1 11/11 None
C10H11.8 ENSEMBL cdna:known chromosome:CEL140:I:4735757:4737785:-1 gene:C10H11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4735756-4737785(-) 97.3 100.0
Public Domain and Genome References
Gene Title
Ensembl C10H11.8
Entrez Gene 182509 Entrez gene
SwissProt P91040 EMBL-EBI
WormBase CE08097 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42347 Hypothetical protein C10H11.8 [Caenorhabditis elegans] ref|NP_491439.1| C10H11.8 [Caenorhabditis elegans] 0.0
blast CAE60363 Hypothetical protein CBG03961 [Caenorhabditis briggsae] 1.0E-176
blast CAE60363 Hypothetical protein CBG03961 [Caenorhabditis briggsae] 1.0E-175
blast EAA04931 ENSANGP00000016015 [Anopheles gambiae str. PEST] ref|XP_309234.2| ENSANGP00000016015 [Anopheles gambiae str. PEST] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0054
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0016
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.7E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.077
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.6E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0054
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0016
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.7E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.077
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.6E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0054
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0016
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.7E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.077
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.6E-7
Sequence
Target Sequence 
>C. ELEGANS:184715_AT
tgttcgtttcaaccaattctgctcatgtctgggtttgggatgtagtcaatcatattttca
tgagacttccgatgccagatgatctgaaaatgcaggaattcgtacaaaagctggcagttc
atccatcaggaaagaaactaacaggaattacgaataaaggacgtcttctgtgttgggatt
tgatgacgagagaagtcgtcgaatcgagtgcatttgatatgtttaaatctccaattgttc
caattgaacaagacactggaacctatggatgtcttcgtgatgaggataaacattataaaa
tgagagaaggccatggtctatcgtgtcgttatagtcccgatggaaaatatattgttgcat
ctggatctgaaaaagaagtttatgtttttaattcggaaactatggaaatcaaaggttccc
tgcagacagagtgtggatggaattgggatgctattttctcttctgaaggaagatacatct
tcactggcggaaacgacaatcaggtcaaaatctgggatgtggagaacaataaaaaggtcg
cacaatgggatggtcacataaaaccgctcaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGTTTCAACCAATTCTGCTCA 638 561 554 Antisense
AATTCTGCTCATGTCTGGGTTTGGG 670 175 568 Antisense
GAGACTTCCGATGCCAGATGATCTG 298 393 615 Antisense
AAAGCTGGCAGTTCATCCATCAGGA 611 123 660 Antisense
AAGGACGTCTTCTGTGTTGGGATTT 323 159 710 Antisense
AGAAGGCCATGGTCTATCGTGTCGT 431 75 858 Antisense
AAGGTTCCCTGCAGACAGAGTGTGG 119 155 965 Antisense
TTGGGATGCTATTTTCTCTTCTGAA 693 707 996 Antisense
GATACATCTTCACTGGCGGAAACGA 174 423 1025 Antisense
AAGGTCGCACAATGGGATGGTCACA 119 161 1087 Antisense
GATGGTCACATAAAACCGCTCACCG 8 409 1102 Antisense
Sequence Source Affymetrix Proprietary Database