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[184713_at]

Description F35F10.5 /REP_DB=WormBase Gene ID /WP=CE09930 /TR=Q9GYU3 /GB=AAF99929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 40      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 13
(-3)
A 		105.3
(1.5)
A 		134.9
(3)
A 		121.2
(2.3)
A 		122
B 13.1
(-3)
A 		41.8
(-2.1)
A 		205
(3)
P 		59.7
(-1.5)
A 		192
C 62.4
(-3)
A 		101.2
(-1.1)
A 		183.9
(3)
P 		119.5
(-0.2)
A 		122
avr 29.5
(-3) 		82.8
(-0.8) 		174.6
(3) 		100.1
(-0.1) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 49.9
(-1.2)
A 		42.6
(-1.5)
A 		7.2
(-3)
A 		52.1
(-1.1)
A 		68
(-0.5)
A 		150.8
(3)
A 		144
B 39.6
(-3)
A 		59.1
(-1.8)
A 		135.5
(3)
M 		64.1
(-1.5)
A 		111
(1.5)
A 		51.5
(-2.3)
A 		96
C 47
(-0.6)
A 		41.5
(-1.2)
A 		24.6
(-3)
A 		81.1
(3)
A 		74.4
(2.3)
A 		53.1
(0)
A 		57
avr 45.5
(-3) 		47.7
(-2.7) 		55.8
(-1.4) 		65.8
(0.1) 		84.5
(2.9) 		85.1
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 4.7
(-3)
A 		22.8
(0.5)
A 		35.3
(3)
A 		17.7
(-0.5)
A 		31
B 4.2
(-3)
A 		10.3
(-2.2)
A 		47.5
(3)
P 		12.7
(-1.8)
A 		43
C 20.7
(-2.9)
A 		29.1
(-1.8)
A 		64.1
(3)
P 		20.1
(-3)
A 		44
avr 9.9
(-3) 		20.7
(-1.3) 		49
(3) 		16.8
(-1.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.2
(-1.7)
A 		15.1
(-0.7)
A 		1.6
(-3)
A 		13.2
(-1)
A 		20.5
(0.2)
A 		36.7
(3)
A 		35
B 13.8
(-3)
A 		19.7
(-1.9)
A 		32.9
(0.7)
M 		17
(-2.4)
A 		45.1
(3)
A 		19.2
(-2)
A 		31
C 17.4
(0.7)
A 		12.7
(-0.8)
A 		6.3
(-3)
A 		16.3
(0.4)
A 		24.1
(3)
A 		17.8
(0.9)
A 		18
avr 13.5
(-3) 		15.8
(-2.2) 		13.6
(-3) 		15.5
(-2.3) 		29.9
(3) 		24.6
(1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15020
Sequence Type Exemplar sequence
Representative Public ID F35F10.5 NCBI
Target Description F35F10.5 /REP_DB=WormBase Gene ID /WP=CE09930 /TR=Q9GYU3 /GB=AAF99929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071507 NCBI Caenorhabditis elegans F35F10.5 (F35F10.5) mRNA, complete cds. 11/11 None
F35F10.5 ENSEMBL cdna:known chromosome:CEL140:V:3284848:3286031:1 gene:F35F10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011239 5/11 Cross Hyb Matching Probes None
GENEFINDER00000011254 5/11 Cross Hyb Matching Probes None
SNAP00000029744 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3284847-3286031(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F10.5
Entrez Gene 185310 Entrez gene
SwissProt Q9GYU3 EMBL-EBI
WormBase CE09930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99929 Hypothetical protein F35F10.5 [Caenorhabditis elegans] ref|NP_503908.1| F35F10.5 [Caenorhabditis elegans] 1.0E-115
blast AAD34650 Hypothetical protein C17B7.12 [Caenorhabditis elegans] ref|NP_503932.2| C17B7.12 [Caenorhabditis elegans] 4.0E-90
blast CAE18023 Hypothetical protein Y57G11C.40 [Caenorhabditis elegans] ref|NP_001023524.1| Y57G11C.40 [Caenorhabditis elegans] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:184713_AT
atcttccacgcagttacaaattgtcgaatacaggattgattctagagaataaggagtaca
aagatgaaagccaaaagtgtcttgatcaactgacctgtgatctatctaagagcgccttca
aagttcaagcggtaacacaagaaattatggagaaatttggagagatagcctcctgcttcc
ataacgcctatccaaaagtgaaggaaatgtgtgccagaaaaacaaatgccagcaacaagg
actgctcgaattatgaggaaaacgtcaaatgcattgaagaagatcttgctaaaacccggt
tctgcagtcaaccagatattgaaaacttcaaaacattttcccatctaattgttgaaacct
gtaaagcaactgttgagtatcaaaaagctgctcacaattgtcgcccgaaggacattgaac
aggagtgcgatgttggaaaaggttcaccagccagatattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCCACGCAGTTACAAATTGTC 530 31 128 Antisense
TGCTTCCATAACGCCTATCCAAAAG 469 579 301 Antisense
CCATAACGCCTATCCAAAAGTGAAG 73 271 306 Antisense
CAAATGCCAGCAACAAGGACTGCTC 290 193 350 Antisense
GCAACAAGGACTGCTCGAATTATGA 283 317 359 Antisense
AAAAAGCTGCTCACAATTGTCGCCC 618 129 509 Antisense
TGCTCACAATTGTCGCCCGAAGGAC 48 581 516 Antisense
GTCGCCCGAAGGACATTGAACAGGA 587 473 527 Antisense
GAAGGACATTGAACAGGAGTGCGAT 564 333 534 Antisense
GGAGTGCGATGTTGGAAAAGGTTCA 77 517 549 Antisense
AAAAGGTTCACCAGCCAGATATTTA 41 131 564 Antisense
Sequence Source Affymetrix Proprietary Database