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[184711_at]

Description C49G7.10 /REP_DB=WormBase Gene ID /WP=CE08868 /TR=O16222 /GB=AAK18905.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_high_8_8 > 05      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1909
1 2 3 4 range
A 402.6
(-2.1)
P 		171.5
(-2.9)
P 		127.8
(-3)
M 		2023.3
(3)
P 		1896
B 449.4
(-2)
P 		155.9
(-2.9)
P 		126.3
(-3)
P 		2034.8
(3)
P 		1909
C 365
(-2.3)
P 		172.6
(-2.9)
P 		149.9
(-3)
P 		2007.3
(3)
P 		1857
avr 405.7
(-2.1) 		166.7
(-2.9) 		134.7
(-3) 		2021.8
(3) 		1887

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 850.7
(3)
P 		539.9
(-0.5)
P 		487.7
(-1.1)
P 		449.3
(-1.5)
P 		316.5
(-3)
P 		638.6
(0.6)
P 		534
B 694.1
(1.3)
P 		588.8
(-0)
P 		473.8
(-1.4)
P 		347.4
(-3)
P 		350.6
(-3)
P 		835.6
(3)
P 		488
C 737.1
(2.9)
P 		582.5
(1.1)
P 		459.6
(-0.3)
P 		502.4
(0.2)
P 		219.8
(-3)
P 		748.7
(3)
P 		529
avr 760.6
(3) 		570.4
(0.5) 		473.7
(-0.7) 		433
(-1.2) 		295.6
(-3) 		741
(2.7) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 146.6
(-0.4)
P 		37.2
(-2.9)
P 		33.4
(-3)
M 		296.2
(3)
P 		263
B 143.3
(-1.3)
P 		38.5
(-2.9)
P 		29.3
(-3)
P 		433.6
(3)
P 		404
C 120.8
(-1.5)
P 		49.6
(-3)
P 		52.3
(-2.9)
P 		338.5
(3)
P 		289
avr 136.9
(-1.1) 		41.8
(-2.9) 		38.3
(-3) 		356.1
(3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 156.8
(0.8)
P 		192
(3)
P 		106.2
(-2.3)
P 		114
(-1.8)
P 		95.5
(-3)
P 		155.5
(0.7)
P 		97
B 241.5
(1.1)
P 		196
(-0.2)
P 		115
(-2.4)
P 		92
(-3)
P 		142.5
(-1.6)
P 		311.6
(3)
P 		220
C 273.2
(3)
P 		177.7
(0.2)
P 		117
(-1.6)
P 		101
(-2.1)
P 		71.1
(-3)
P 		250.6
(2.3)
P 		202
avr 223.8
(2.3) 		188.6
(0.8) 		112.7
(-2.5) 		102.3
(-3) 		103
(-3) 		239.2
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15759
Sequence Type Exemplar sequence
Representative Public ID C49G7.10 NCBI
Target Description C49G7.10 /REP_DB=WormBase Gene ID /WP=CE08868 /TR=O16222 /GB=AAK18905.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071725 NCBI Caenorhabditis elegans C49G7.10 (C49G7.10) mRNA, complete cds. 11/11 None
SNAP00000008205 ENSEMBL cdna:SNAP chromosome:CEL140:V:4040266:4041146:-1 11/11 None
GENEFINDER00000008215 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4040266:4041804:-1 11/11 None
C49G7.10 ENSEMBL cdna:known chromosome:CEL140:V:4040387:4041086:-1 gene:C49G7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4040386-4041086(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G7.10
Entrez Gene 183624 Entrez gene
SwissProt O16222 EMBL-EBI
WormBase CE08868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18905 Hypothetical protein C49G7.10 [Caenorhabditis elegans] ref|NP_504126.1| C49G7.10 [Caenorhabditis elegans] 1.0E-106
blast AAK18905 Hypothetical protein C49G7.10 [Caenorhabditis elegans] ref|NP_504126.1| C49G7.10 [Caenorhabditis elegans] 1.0E-104
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 1.0E-72
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 4.0E-59
blast AAK18900 Hypothetical protein C49G7.5 [Caenorhabditis elegans] ref|NP_504128.1| C49G7.5 [Caenorhabditis elegans] 5.0E-59
blast CAE58291 Hypothetical protein CBG01398 [Caenorhabditis briggsae] 5.0E-55
blast CAE58291 Hypothetical protein CBG01398 [Caenorhabditis briggsae] 7.0E-55
Sequence
Target Sequence 
>C. ELEGANS:184711_AT
gtgttccagcaagatttagctccttatgtgaaatattcgttgaacaagaagaagcgatgg
gagactggaaatgataagaattatctttccgaagttcaaaaacgttatcgcggaatggac
atgtttgtgattgaccgtgttcggcttaatagttccccatatttttgtttcatttctcga
gaaaattttttccacaactattttctgcaatttccaatccgtcaactccatcaactcaat
gcagataattcttactcatacgtgtatgctaatcaaacctacgggcaatcctacaaaagt
cttcaacctgaaaatcgatctccttcaaaatcaaaaagtgccaaaaagccggagctgtat
cagaatgccaaagttgcgtaccacattatcactcctcctaaaaactatgaaaaacttcaa
gctccgaaattttgtccgggaagtagcgacagaaatcttactcatcggacccttacgcat
tggcgccgagtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCCAGCAAGATTTAGCTCCTT 341 485 25 Antisense
ATGTTTGTGATTGACCGTGTTCGGC 189 47 145 Antisense
GTGTTCGGCTTAATAGTTCCCCATA 140 485 161 Antisense
TTTTTTCCACAACTATTTTCTGCAA 337 675 210 Antisense
GCTAATCAAACCTACGGGCAATCCT 311 297 292 Antisense
GGCAATCCTACAAAAGTCTTCAACC 36 535 308 Antisense
CTTCAACCTGAAAATCGATCTCCTT 177 199 325 Antisense
GCCAAAGTTGCGTACCACATTATCA 566 277 391 Antisense
CACATTATCACTCCTCCTAAAAACT 472 195 406 Antisense
GACAGAAATCTTACTCATCGGACCC 341 367 472 Antisense
CCTTACGCATTGGCGCCGAGTCAAA 80 269 495 Antisense
Sequence Source Affymetrix Proprietary Database