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[184710_at]

Description Y9C9A.16 /REP_DB=WormBase Gene ID /WP=CE25650 /TR=Q9N2S1 /GB=AAF60938.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      6grp_total > 85      4grp_total > 18      6grp_high1_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 53.3
(-2.9)
M 		54.2
(-2.8)
A 		51.4
(-3)
A 		129.6
(3)
P 		78
B 57.6
(-3)
A 		101.5
(0.5)
A 		60
(-2.8)
M 		132.5
(3)
P 		75
C 74.2
(-1.8)
P 		87.5
(-0.8)
A 		59.7
(-3)
A 		134.8
(3)
P 		75
avr 61.7
(-2.6) 		81.1
(-1.1) 		57
(-3) 		132.3
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 119.3
(-2.3)
P 		80.8
(-3)
P 		124.1
(-2.2)
P 		323.3
(1.4)
P 		363.3
(2.1)
P 		413.2
(3)
P 		332
B 106.1
(-3)
P 		126
(-2.6)
P 		166
(-1.9)
P 		263.7
(-0.2)
P 		351.2
(1.3)
P 		447
(3)
P 		341
C 38.3
(-3)
A 		106.1
(-2)
P 		202
(-0.7)
P 		314.1
(0.9)
P 		369.9
(1.7)
P 		458.1
(3)
P 		420
avr 87.9
(-3) 		104.3
(-2.7) 		164
(-1.7) 		300.4
(0.6) 		361.5
(1.7) 		439.4
(3) 		352
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 19.4
(3)
M 		11.8
(-3)
A 		13.4
(-1.7)
A 		19
(2.7)
P 		8
B 18.4
(-1.1)
A 		25.1
(1.7)
A 		13.9
(-3)
M 		28.2
(3)
P 		14
C 24.6
(2.2)
P 		25.2
(3)
A 		20.8
(-3)
A 		22.7
(-0.4)
P 		4
avr 20.8
(0.9) 		20.7
(0.9) 		16
(-3) 		23.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 22
(-3)
P 		28.7
(-2.5)
P 		27
(-2.7)
P 		82
(1.1)
P 		109.6
(3)
P 		100.6
(2.4)
P 		88
B 36.9
(-3)
P 		41.9
(-2.8)
P 		40.3
(-2.8)
P 		69.8
(-1.5)
P 		142.7
(1.9)
P 		166.7
(3)
P 		130
C 14.2
(-3)
A 		32.4
(-2.2)
P 		51.4
(-1.4)
P 		63.2
(-0.9)
P 		119.7
(1.5)
P 		153.4
(3)
P 		139
avr 24.4
(-3) 		34.3
(-2.5) 		39.6
(-2.2) 		71.7
(-0.5) 		124
(2.2) 		140.2
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11197
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.16 NCBI
Target Description Y9C9A.16 /REP_DB=WormBase Gene ID /WP=CE25650 /TR=Q9N2S1 /GB=AAF60938.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068287 NCBI Caenorhabditis elegans Y9C9A.16 (Y9C9A.16) mRNA, complete cds. 11/11 None
SNAP00000021401 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4973612:4976079:-1 11/11 None
GENEFINDER00000021413 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4971953:4975652:-1 11/11 None
Y9C9A.16 ENSEMBL cdna:known chromosome:CEL140:IV:4974188:4976304:-1 gene:Y9C9A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4974193-4976310(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.16
Entrez Gene 189421 Entrez gene
SwissProt Q9N2S1 EMBL-EBI
WormBase CE25650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500688 Y9C9A.16 [Caenorhabditis elegans] gb|AAF60938.1| Hypothetical protein Y9C9A.16 [Caenorhabditis elegans] 0.0
blast CAE71758 Hypothetical protein CBG18748 [Caenorhabditis briggsae] 0.0
blast CAB05173 Hypothetical protein F02H6.5 [Caenorhabditis elegans] ref|NP_502729.1| F02H6.5 [Caenorhabditis elegans] 1.0E-178
blast CAE71758 Hypothetical protein CBG18748 [Caenorhabditis briggsae] 1.0E-169
blast CAB05173 Hypothetical protein F02H6.5 [Caenorhabditis elegans] ref|NP_502729.1| F02H6.5 [Caenorhabditis elegans] 1.0E-162
blast CAE71758 Hypothetical protein CBG18748 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021413 1 403-425
Sequence
Target Sequence 
>C. ELEGANS:184710_AT
tgcaatttacacctttccaaacacccctatcaaatgtgcaggagccccccaaaaagcatg
ttatataactgattcaatcctccgacaaagaggagttcgtgataaggctcatatgattta
tgcaactagtttgagcaagatatttggcgtggatcattacgtcaaggcattggaaaaagt
tgctcaagaaaagactatagaagtaaaaacaaagagaaatttaattgaagttgttacaaa
taataaaaaagcaattttcgaactactgggcgacgattccaagccaaccggcgttacgga
ggaaattgagttctctcttctccatatcagcccaccatgcactgccccggaaccactacg
atcttctcattttgccgataaaactgggtttatggatgtcgacccacaaactttgcagtc
aaaaaactatccaaatgtgtttggtgttggagattgtatgaacacaccaaatgcaaaaac
agctgcatcagtttctacgcacttgaaaactgtcgacacaaatttgacacaagttatgca
gggagcacggccattcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATTTACACCTTTCCAAACACC 15 577 567 Antisense
GGAGCCCCCCAAAAAGCATGTTATA 354 501 607 Antisense
AACTGATTCAATCCTCCGACAAAGA 274 141 633 Antisense
GTGGATCATTACGTCAAGGCATTGG 278 489 715 Antisense
GAACTACTGGGCGACGATTCCAAGC 73 349 826 Antisense
TTCCAAGCCAACCGGCGTTACGGAG 677 675 843 Antisense
AAATTGAGTTCTCTCTTCTCCATAT 444 115 869 Antisense
AACCACTACGATCTTCTCATTTTGC 484 145 917 Antisense
GTCGACCCACAAACTTTGCAGTCAA 656 473 964 Antisense
ACAGCTGCATCAGTTTCTACGCACT 465 109 1045 Antisense
TATGCAGGGAGCACGGCCATTCATG 645 653 1101 Antisense
Sequence Source Affymetrix Proprietary Database