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[184709_at]

Description Y57A10A.6 /REP_DB=WormBase Gene ID /WP=CE22609 /TR=Q9NA86 /GB=CAB55011.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 30.9
(1.2)
A 		17.5
(-0.8)
A 		2.6
(-3)
A 		42.8
(3)
A 		40
B 4.3
(-2.8)
A 		22.8
(3)
A 		15.4
(0.7)
A 		3.6
(-3)
A 		19
C 2.9
(-2.9)
A 		2.4
(-3)
A 		9.5
(-1.6)
A 		33.6
(3)
A 		31
avr 12.7
(-1.8) 		14.2
(-1.3) 		9.2
(-3) 		26.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 44.7
(3)
A 		10.1
(-1.8)
A 		4.9
(-2.6)
A 		3.9
(-2.7)
A 		29
(0.8)
A 		1.7
(-3)
A 		43
B 2.4
(-2.9)
A 		23.5
(1.8)
A 		2
(-3)
A 		3.9
(-2.6)
A 		28.9
(3)
A 		13.7
(-0.4)
A 		27
C 2.1
(-3)
A 		2.3
(-2.9)
A 		4.3
(-2.4)
A 		25.3
(3)
A 		24.8
(2.9)
A 		20.1
(1.7)
A 		23
avr 16.4
(0.2) 		12
(-0.9) 		3.7
(-3) 		11
(-1.2) 		27.6
(3) 		11.8
(-1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.2
(3)
A 		3.8
(-1.2)
A 		0.7
(-3)
A 		6.3
(0.2)
A 		11
B 1.4
(-2.3)
A 		5.6
(3)
A 		3.6
(0.5)
A 		0.8
(-3)
A 		5
C 0.9
(-2.8)
A 		0.7
(-3)
A 		3.3
(0.1)
A 		5.7
(3)
A 		5
avr 4.5
(3) 		3.4
(-0.3) 		2.5
(-3) 		4.3
(2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8.2
(2.6)
A 		3.6
(-0.7)
A 		1.1
(-2.5)
A 		1
(-2.6)
A 		8.8
(3)
A 		0.4
(-3)
A 		8
B 0.8
(-2.8)
A 		7.8
(0.9)
A 		0.5
(-3)
A 		1
(-2.7)
A 		11.7
(3)
A 		5.1
(-0.5)
A 		11
C 0.8
(-2.9)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		5.1
(0.6)
A 		8
(3)
A 		6.7
(1.9)
A 		7
avr 3.3
(-1.3) 		4
(-0.8) 		0.9
(-3) 		2.4
(-2) 		9.5
(3) 		4.1
(-0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3882
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.6 NCBI
Target Description Y57A10A.6 /REP_DB=WormBase Gene ID /WP=CE22609 /TR=Q9NA86 /GB=CAB55011.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026018 ENSEMBL cdna:SNAP chromosome:CEL140:II:12157344:12159016:1 10/11 None
GENEFINDER00000026050 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12156843:12159155:1 11/11 None
Y57A10A.6 ENSEMBL cdna:pseudogene chromosome:CEL140:II:12156843:12159155:1 gene:Y57A10A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12156839-12159152(+) 98.57 100.0
Public Domain and Genome References
Ensembl Y57A10A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31628 hypothetical protein Y57A10A.f - Caenorhabditis elegans 0.0
blast CAB55012 Hypothetical protein Y57A10A.7 [Caenorhabditis elegans] ref|NP_496587.1| Y57A10A.7 [Caenorhabditis elegans] 4.0E-99
blast CAB55009 Hypothetical protein Y57A10A.4 [Caenorhabditis elegans] ref|NP_496584.1| Y57A10A.4 [Caenorhabditis elegans] 7.0E-94
blast CAB07287 Hypothetical protein T28A8.3 [Caenorhabditis elegans] ref|NP_499795.1| T28A8.3 [Caenorhabditis elegans] 1.0E-90
blast CAB55012 Hypothetical protein Y57A10A.7 [Caenorhabditis elegans] ref|NP_496587.1| Y57A10A.7 [Caenorhabditis elegans] 9.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 1.7E-63
Pfam IPR006570 EMBL-EBI SPK 2.0E-41
Pfam IPR006570 EMBL-EBI SPK 8.9E-41
Sequence
Target Sequence 
>C. ELEGANS:184709_AT
catatcgatcatttgcaagcctacaatcaaccatttcctgaggatcattcaaacgaaagt
gacaatgaggtggtgtatattggagcagtggagggacagccgaagcctgaaccgattgat
tttgatttttatcaaatctataatagagatgtatcgcatactgaatcaaagatcataagt
ttgcatgacttcctgaaatccctgatccaattcatttgttttctcgaaagttcggagctc
actgagatcaagcagcaaatcaaggaatcgattagaactgaagaagatgagaacttgcaa
atcactgatcttcgtacagtcctcgatgcattcttcttcggaatcagtcgaaaaactaga
gtagccgcggcaattccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATATCGATCATTTGCAAGCCTACA 168 215 928 Antisense
TGCAAGCCTACAATCAACCATTTCC 107 577 941 Antisense
GCCTACAATCAACCATTTCCTGAGG 225 283 946 Antisense
TCCTGAGGATCATTCAAACGAAAGT 510 291 963 Antisense
ATGAGGTGGTGTATATTGGAGCAGT 144 43 992 Antisense
GGAGCAGTGGAGGGACAGCCGAAGC 225 521 1009 Antisense
GAGATGTATCGCATACTGAATCAAA 197 397 1073 Antisense
AGATGAGAACTTGCAAATCACTGAT 529 67 1212 Antisense
TGATCTTCGTACAGTCCTCGATGCA 247 565 1233 Antisense
TCGTACAGTCCTCGATGCATTCTTC 363 603 1239 Antisense
AACTAGAGTAGCCGCGGCAATTCCC 302 137 1281 Antisense
Sequence Source Affymetrix Proprietary Database