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[184708_s_at]

Description C43E11.5 /REP_DB=WormBase Gene ID /WP=CE08683 /TR=P91147 /GB=AAB37621.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 73
(-2.3)
A 		57
(-3)
A 		63.1
(-2.7)
A 		199.4
(3)
M 		142
B 27.5
(-2.7)
A 		93.1
(-0.9)
A 		16.8
(-3)
A 		233.6
(3)
P 		217
C 72.1
(-2.3)
A 		49.5
(-2.9)
A 		47.4
(-3)
A 		262.6
(3)
P 		215
avr 57.5
(-2.5) 		66.5
(-2.2) 		42.4
(-3) 		231.9
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 20.6
(-3)
A 		58.6
(-2.1)
A 		111.2
(-1)
A 		90.2
(-1.4)
A 		268.1
(2.5)
P 		288.6
(3)
P 		268
B 78.7
(-2.6)
A 		62.5
(-2.9)
A 		58.9
(-3)
A 		98.3
(-2.3)
A 		273.2
(1)
P 		378.3
(3)
P 		319
C 70.7
(-2.7)
A 		93.2
(-2.4)
A 		54
(-3)
A 		80.5
(-2.6)
A 		182.5
(-1.1)
P 		450.4
(3)
P 		396
avr 56.7
(-3) 		71.4
(-2.7) 		74.7
(-2.7) 		89.7
(-2.4) 		241.3
(0.5) 		372.4
(3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 26.6
(2.1)
A 		12.4
(-3)
A 		16.5
(-1.5)
A 		29.2
(3)
M 		17
B 8.8
(-2.4)
A 		23
(-0.5)
A 		3.9
(-3)
A 		49.8
(3)
P 		46
C 23.9
(-1.1)
A 		14.2
(-3)
A 		16.5
(-2.5)
A 		44.3
(3)
P 		30
avr 19.8
(-1.4) 		16.5
(-2.1) 		12.3
(-3) 		41.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 3.8
(-3)
A 		20.8
(-1.7)
A 		24.2
(-1.4)
A 		22.9
(-1.5)
A 		80.9
(3)
P 		70.3
(2.2)
P 		77
B 27.4
(-2.4)
A 		20.8
(-2.7)
A 		14.3
(-3)
A 		26
(-2.4)
A 		111
(1.6)
P 		141.1
(3)
P 		127
C 26.2
(-2.5)
A 		28.5
(-2.4)
A 		13.8
(-3)
A 		16.2
(-2.9)
A 		59.1
(-1)
P 		150.8
(3)
P 		137
avr 19.1
(-2.9) 		23.4
(-2.7) 		17.4
(-3) 		21.7
(-2.8) 		83.7
(0.9) 		120.7
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184708_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1795
Sequence Type Exemplar sequence
Representative Public ID C43E11.5 NCBI
Target Description C43E11.5 /REP_DB=WormBase Gene ID /WP=CE08683 /TR=P91147 /GB=AAB37621.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058855(11), NM_058934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058855 NCBI Caenorhabditis elegans C50F2.5 (C50F2.5) mRNA, complete cds. 11/11 None
NM_058934 NCBI Caenorhabditis elegans C43E11.5 (C43E11.5) mRNA, complete cds. 11/11 None
SNAP00000013850 ENSEMBL cdna:SNAP chromosome:CEL140:I:3895826:3897352:-1 11/11 None
GENEFINDER00000013858 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3895826:3897352:-1 11/11 None
SNAP00000031010 ENSEMBL cdna:SNAP chromosome:CEL140:I:4237035:4238560:1 11/11 None
GENEFINDER00000031025 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4237035:4239059:1 11/11 None
C50F2.5 ENSEMBL cdna:known chromosome:CEL140:I:3895794:3897402:-1 gene:C50F2.5 11/11 None
C43E11.5 ENSEMBL cdna:known chromosome:CEL140:I:4237035:4238560:1 gene:C43E11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4237034-4238560(+) 100.0 100.0
chrI:3895825-3897352(-) 99.19 99.19
Public Domain and Genome References
Gene Title

Ensembl C50F2.5
C43E11.5
Entrez Gene 171973 Entrez gene
172022 Entrez gene
SwissProt P91147 EMBL-EBI
P91179 EMBL-EBI
WormBase CE08683 Wormbase
CE08911 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37798 Hypothetical protein C50F2.5 [Caenorhabditis elegans] ref|NP_491256.1| C50F2.5 [Caenorhabditis elegans] 0.0
blast AAB37621 Hypothetical protein C43E11.5 [Caenorhabditis elegans] ref|NP_491335.1| C43E11.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-36
Sequence
Target Sequence 
>C. ELEGANS:184708_S_AT
aactctttccatcgtttgcaaggctcgtgaaggtcttagcatgggagcaaccaagtatga
gctagagttgactgatagtgaagttgtgatcgataagaacagcgatgatccgaatgcatc
gaactataaaagtcaccgactcatcgttttccatatgaatacttggtctggacagaagcc
aacttccgggaatgctttggagcaagctcaaaacgtggctcttttctttcgtgaggtcaa
gaagtttgagatggacattctgcgtaaaagtatggaaaactttgtgccaccagtcatgct
ccaatcattcgatggcattaatcgtgcatccactggttgggttgctttgatgttgttgag
agacgtcgagaaacgagagtgttttgatgttccaagcttgatcaaagcaatcatgaagtt
tcgaaatggatccatctccacctactatcaattctgtttctgcatggctgtttgcttgaa
tatcggaaaggatacaaattggtgcgcaaatgattgcagcacggcactgactgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTTTCCATCGTTTGCAAGGCT 229 141 528 Antisense
TAAAAGTCACCGACTCATCGTTTTC 160 641 654 Antisense
GAAGCCAACTTCCGGGAATGCTTTG 505 345 702 Antisense
GCAAGCTCAAAACGTGGCTCTTTTC 165 321 729 Antisense
TGGCTCTTTTCTTTCGTGAGGTCAA 569 545 743 Antisense
AAAACTTTGTGCCACCAGTCATGCT 115 131 803 Antisense
AATCGTGCATCCACTGGTTGGGTTG 484 167 847 Antisense
GGTTGGGTTGCTTTGATGTTGTTGA 520 507 862 Antisense
TTCGAAATGGATCCATCTCCACCTA 660 691 947 Antisense
ATCAATTCTGTTTCTGCATGGCTGT 222 27 974 Antisense
GATTGCAGCACGGCACTGACTGATT 126 435 1039 Antisense
Sequence Source Affymetrix Proprietary Database