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[184707_s_at]

Description C32H11.10 /REP_DB=WormBase Gene ID /WP=CE19717 /TR=Q9U3N6 /GB=CAB05136.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 56      6grp_total > 38      4grp_total > 63      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 152.5
(-0)
P 		56.4
(-3)
P 		248.8
(3)
P 		64.3
(-2.8)
P 		192
B 177.9
(2.1)
P 		85.2
(-0.8)
P 		208.7
(3)
P 		11.6
(-3)
A 		197
C 217.5
(2.2)
P 		84.3
(-3)
P 		239.3
(3)
P 		88.6
(-2.8)
P 		155
avr 182.6
(1.3) 		75.3
(-2.3) 		232.3
(3) 		54.8
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 10.1
(-0.4)
A 		4.3
(-2.1)
A 		14.4
(0.8)
A 		22
(3)
A 		1
(-3)
A 		16.8
(1.5)
A 		21
B 57.8
(3)
M 		33.3
(0.3)
A 		10.5
(-2.3)
A 		3.8
(-3)
A 		35
(0.5)
A 		17.1
(-1.5)
A 		54
C 14.7
(-3)
A 		36.4
(3)
P 		15.5
(-2.8)
A 		20.3
(-1.5)
A 		24.4
(-0.3)
A 		29.9
(1.2)
A 		22
avr 27.5
(3) 		24.7
(1.8) 		13.5
(-3) 		15.4
(-2.2) 		20.1
(-0.2) 		21.3
(0.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 55.5
(2)
P 		12.2
(-2.7)
P 		65
(3)
P 		9.4
(-3)
P 		56
B 56.7
(3)
P 		21.1
(-0.9)
P 		48.4
(2.1)
P 		2.5
(-3)
A 		54
C 72
(2)
P 		24.2
(-2.2)
P 		83.4
(3)
P 		14.9
(-3)
P 		69
avr 61.4
(2.6) 		19.2
(-1.9) 		65.6
(3) 		8.9
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.9
(-1.2)
A 		1.5
(-1.6)
A 		3.1
(0.2)
A 		5.6
(3)
A 		0.3
(-3)
A 		4.1
(1.3)
A 		5
B 20.1
(3)
M 		11.1
(0.2)
A 		2.6
(-2.5)
A 		1
(-3)
A 		14.2
(1.1)
A 		6.4
(-1.3)
A 		19
C 5.4
(-1.8)
A 		11.1
(3)
P 		3.9
(-3)
A 		4.1
(-2.8)
A 		7.9
(0.3)
A 		10
(2.1)
A 		7
avr 9.1
(3) 		7.9
(1.8) 		3.2
(-3) 		3.6
(-2.6) 		7.5
(1.4) 		6.8
(0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184707_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9883
Sequence Type Exemplar sequence
Representative Public ID C32H11.10 NCBI
Target Description C32H11.10 /REP_DB=WormBase Gene ID /WP=CE19717 /TR=Q9U3N6 /GB=CAB05136.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070070(11), NM_070071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070070 NCBI Caenorhabditis elegans C32H11.9 (C32H11.9) mRNA, complete cds. 11/11 None
NM_070071 NCBI Caenorhabditis elegans Downstream Of DAF-16 (regulated by DAF-16) family member (dod-21) (dod-21) mRNA, complete cds. 11/11 None
SNAP00000038559 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12935021:12936217:-1 11/11 None
SNAP00000038560 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12936722:12937918:1 11/11 None
GENEFINDER00000038570 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12936722:12937918:1 11/11 None
GENEFINDER00000038574 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12935021:12936241:-1 11/11 None
C32H11.9 ENSEMBL cdna:known chromosome:CEL140:IV:12935021:12936241:-1 gene:C32H11.9 11/11 None
C32H11.10 ENSEMBL cdna:known chromosome:CEL140:IV:12936722:12937918:1 gene:C32H11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12936727-12937924(+) 100.0 100.0
chrIV:12935026-12936223(-) 99.91 99.91
Public Domain and Genome References
Gene Title

Gene Symbol dod-21
Ensembl C32H11.9
C32H11.10
Entrez Gene 183133 Entrez gene
183134 Entrez gene
SwissProt Q9U3N6 EMBL-EBI
Q9XUH4 EMBL-EBI
WormBase CE19717 Wormbase
CE19716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05135 Hypothetical protein C32H11.9 [Caenorhabditis elegans] ref|NP_502471.1| C32H11.9 [Caenorhabditis elegans] 0.0
blast CAB05136 Hypothetical protein C32H11.10 [Caenorhabditis elegans] ref|NP_502472.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-21) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-45
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-45
Sequence
Target Sequence 
>C. ELEGANS:184707_S_AT
ccaattgcagttcgtccaacaagtaatctaacaacatttgttggagaaaacaattcacat
atttcattaatggcattctcaatggcaaacagcacattgaaccatcttcttcgtcaaact
ctcattttcagtggagaatcagtattggatgaatttattggaacacttggacaagtattg
gaatcaaagcaacaattaactgcgtatggaaataagatttcagtgcatacttttggattg
aatagttcaattgattatcctctttttatgggccaacactttgaagatacaaatggaaca
atgatgtatcaaggtgcaaattgtccatcttctggaaattgtactgtcactttgaattca
cattctggacgttcttggactgtaacaagtttccacggtcctgaatacatcaaaagcttc
aaatctttcccggatactgctgtgattaatgtctacgaaaaccgtatttctaacacaacc
tgcgttgccaaattgacaagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATTGCAGTTCGTCCAACAAGTA 468 277 469 Antisense
CAGCACATTGAACCATCTTCTTCGT 140 205 558 Antisense
TCTTCGTCAAACTCTCATTTTCAGT 137 617 576 Antisense
GATTATCCTCTTTTTATGGGCCAAC 422 429 721 Antisense
ATCAAGGTGCAAATTGTCCATCTTC 137 27 776 Antisense
TTCACATTCTGGACGTTCTTGGACT 18 687 825 Antisense
AAGTTTCCACGGTCCTGAATACATC 314 155 855 Antisense
AAGCTTCAAATCTTTCCCGGATACT 698 149 882 Antisense
GATACTGCTGTGATTAATGTCTACG 18 425 901 Antisense
ACCGTATTTCTAACACAACCTGCGT 349 89 929 Antisense
TGCGTTGCCAAATTGACAAGCTCCA 368 583 949 Antisense
Sequence Source Affymetrix Proprietary Database