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[184706_at]

Description F58E1.14 /REP_DB=WormBase Gene ID /WP=CE11398 /TR=Q9TZF7 /GB=AAC67475.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 15
(-2.2)
A 		9.3
(-2.7)
A 		5.7
(-3)
A 		73
(3)
A 		67
B 5.3
(-3)
A 		11.7
(-1.9)
A 		18.6
(-0.7)
A 		40.7
(3)
A 		35
C 7
(-3)
A 		62.1
(-0.1)
A 		21.2
(-2.2)
A 		120
(3)
A 		113
avr 9.1
(-3) 		27.7
(-1.4) 		15.2
(-2.5) 		77.9
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 63.6
(3)
A 		10.1
(-2.5)
A 		40.6
(0.6)
A 		5.7
(-3)
A 		13.8
(-2.2)
A 		12.1
(-2.3)
A 		58
B 8.3
(-2.6)
A 		5.7
(-3)
A 		9.8
(-2.4)
A 		7.6
(-2.7)
A 		15.2
(-1.6)
A 		45.3
(3)
A 		40
C 7.5
(-2.7)
A 		47.4
(1.3)
A 		7.6
(-2.7)
A 		4.2
(-3)
A 		18.2
(-1.6)
A 		63.9
(3)
A 		60
avr 26.5
(0.6) 		21.1
(-0.3) 		19.3
(-0.7) 		5.8
(-3) 		15.7
(-1.3) 		40.4
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5.5
(-0.4)
A 		2
(-2.7)
A 		1.5
(-3)
A 		10.7
(3)
A 		9
B 1.7
(-3)
A 		2.9
(-2)
A 		4.3
(-0.8)
A 		8.7
(3)
A 		7
C 2.3
(-3)
A 		17.9
(2.2)
A 		7.4
(-1.3)
A 		20.2
(3)
A 		18
avr 3.2
(-3) 		7.6
(-0.4) 		4.4
(-2.3) 		13.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.7
(3)
A 		3.6
(-1.7)
A 		8.8
(1.3)
A 		1.4
(-3)
A 		4.2
(-1.4)
A 		2.9
(-2.1)
A 		10
B 2.9
(-2.6)
A 		1.9
(-3)
A 		2.4
(-2.8)
A 		2
(-3)
A 		6.2
(-1.3)
A 		16.9
(3)
A 		15
C 2.8
(-2.4)
A 		14.5
(1)
A 		1.9
(-2.7)
A 		0.8
(-3)
A 		5.9
(-1.5)
A 		21.4
(3)
A 		21
avr 5.8
(-0.9) 		6.7
(-0.4) 		4.4
(-1.5) 		1.4
(-3) 		5.4
(-1) 		13.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4673
Sequence Type Exemplar sequence
Representative Public ID F58E1.14 NCBI
Target Description F58E1.14 /REP_DB=WormBase Gene ID /WP=CE11398 /TR=Q9TZF7 /GB=AAC67475.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061647 NCBI Caenorhabditis elegans F58E1.14 (F58E1.14) mRNA, complete cds. 11/11 None
F58E1.14 ENSEMBL cdna:known chromosome:CEL140:II:1702423:1703466:-1 gene:F58E1.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033212 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1702421-1703465(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E1.14
Entrez Gene 186518 Entrez gene
SwissProt Q9TZF7 EMBL-EBI
WormBase CE11398 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 1.0E-172
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 2.0E-50
blast AAB95030 Hypothetical protein K05F6.9 [Caenorhabditis elegans] ref|NP_493999.1| K05F6.9 [Caenorhabditis elegans] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:184706_AT
aaaatttcgcttgtcgtcgagctctactccgcatttcaacatataaaaaagttcagtcta
cgccaatactctcataaaccattggactcaactctactgctggaactacgtcaccttttg
tccaaaacaaatcagcaactatgtttaaatataaaccttccgttaaatgagctacttctc
acgagctgctcatccattgacatacaccgtacacagttaacagacaaagatatcaatgtg
tttttgaagcattggtttgccggattgaaaccagaacttgaacatttccgagttcgaaaa
gacggacctgcattcaaccaaaaaactattctcaaaggaattcctcatgagtttgcatca
attggtagaaaattcaaactttttgaaatggattctcaagttggaggaatcgatatcgac
ttgggtcaagacatcaaagcaacgctggttttcaatcataaacctggcattgcagatttc
tcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTTCGCTTGTCGTCGAGCTCT 351 133 478 Antisense
CTCTACTCCGCATTTCAACATATAA 105 231 499 Antisense
AAGTTCAGTCTACGCCAATACTCTC 223 157 526 Antisense
AAACCATTGGACTCAACTCTACTGC 577 125 553 Antisense
TCAACTCTACTGCTGGAACTACGTC 314 629 565 Antisense
TGGAACTACGTCACCTTTTGTCCAA 661 543 578 Antisense
TGAGCTACTTCTCACGAGCTGCTCA 347 569 645 Antisense
AGCTGCTCATCCATTGACATACACC 190 81 661 Antisense
AAAAGACGGACCTGCATTCAACCAA 174 113 774 Antisense
GGAATTCCTCATGAGTTTGCATCAA 117 535 814 Antisense
AACCTGGCATTGCAGATTTCTCAGT 508 147 938 Antisense
Sequence Source Affymetrix Proprietary Database