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[184704_at]

Description F08D12.2 /REP_DB=WormBase Gene ID /WP=CE09235 /TR=P91238 /GB=AAB37926.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 51      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 527
1 2 3 4 range
A 435.9
(0.7)
P 		617.5
(3)
A 		521
(1.8)
P 		149.1
(-3)
A 		468
B 406.5
(1.6)
P 		499.9
(3)
A 		390.6
(1.4)
A 		90.8
(-3)
A 		409
C 416.5
(1.7)
P 		495.3
(3)
A 		443.1
(2.1)
M 		133.2
(-3)
A 		362
avr 419.6
(1.3) 		537.6
(3) 		451.6
(1.8) 		124.4
(-3) 		413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 383.6
(3)
A 		246.5
(-2.7)
A 		353.2
(1.7)
P 		292.1
(-0.8)
A 		238.8
(-3)
A 		240.6
(-2.9)
A 		145
B 381.4
(2.6)
P 		313.3
(0.1)
A 		390.7
(3)
P 		372.2
(2.3)
P 		307.6
(-0.1)
A 		232.1
(-3)
M 		159
C 316.9
(-0.8)
P 		271.4
(-2.2)
A 		445.8
(3)
P 		254.9
(-2.7)
P 		311
(-1)
A 		243.8
(-3)
P 		202
avr 360.6
(1.6) 		277.1
(-1.5) 		396.6
(3) 		306.4
(-0.4) 		285.8
(-1.2) 		238.8
(-3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 158.7
(3)
P 		134.1
(1.9)
A 		136.2
(2)
P 		21.8
(-3)
A 		137
B 129.6
(3)
P 		123.5
(2.7)
A 		90.5
(0.9)
A 		19.4
(-3)
A 		110
C 137.9
(2.2)
P 		142.4
(2.5)
A 		154.4
(3)
M 		22.5
(-3)
A 		132
avr 142.1
(3) 		133.3
(2.6) 		127
(2.3) 		21.2
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 70.7
(-0.5)
A 		87.7
(3)
A 		76.9
(0.8)
P 		74.1
(0.2)
A 		72.1
(-0.2)
A 		58.6
(-3)
A 		29
B 132.7
(3)
P 		104.3
(-0.7)
A 		94.9
(-1.9)
P 		98.6
(-1.4)
P 		125
(2)
A 		86.5
(-3)
M 		46
C 117.5
(3)
P 		82.8
(-0.1)
A 		113.5
(2.6)
P 		51.3
(-3)
P 		100.6
(1.5)
A 		81.6
(-0.3)
P 		66
avr 107
(3) 		91.6
(0.1) 		95.1
(0.8) 		74.7
(-3) 		99.2
(1.6) 		75.6
(-2.8) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4234
Sequence Type Exemplar sequence
Representative Public ID F08D12.2 NCBI
Target Description F08D12.2 /REP_DB=WormBase Gene ID /WP=CE09235 /TR=P91238 /GB=AAB37926.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061963(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061963 NCBI Caenorhabditis elegans F08D12.2 (F08D12.2) mRNA, complete cds. 10/11 None
SNAP00000023720 ENSEMBL cdna:SNAP chromosome:CEL140:II:2781670:2782973:1 11/11 None
GENEFINDER00000023735 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2781670:2782973:1 10/11 None
F08D12.2 ENSEMBL cdna:known chromosome:CEL140:II:2781670:2782973:1 gene:F08D12.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2781668-2782972(+) 90.65 100.0
Public Domain and Genome References
Gene Title
Ensembl F08D12.2
Entrez Gene 184176 Entrez gene
SwissProt P91238 EMBL-EBI
WormBase CE36818 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37926 Hypothetical protein F08D12.2 [Caenorhabditis elegans] ref|NP_494364.2| F08D12.2 [Caenorhabditis elegans] 1.0E-119
blast AAB37926 Hypothetical protein F08D12.2 [Caenorhabditis elegans] ref|NP_494364.2| F08D12.2 [Caenorhabditis elegans] 1.0E-116
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 5.0E-65
blast AAB37928 Hypothetical protein F08D12.3b [Caenorhabditis elegans] ref|NP_494361.2| F08D12.3b [Caenorhabditis elegans] 5.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 2.8E-16
Pfam IPR007026 EMBL-EBI CC domain 1.4E-14
Pfam IPR007026 EMBL-EBI CC domain 0.09
Pfam IPR007026 EMBL-EBI CC domain 2.5E-14
Pfam IPR007026 EMBL-EBI CC domain 0.0052
Pfam IPR007026 EMBL-EBI CC domain 0.0052
Sequence
Target Sequence 
>C. ELEGANS:184704_AT
caagtcgccaactggaccggcaattttggacgcctgccctgctggacaagttcatattat
gaactattgctgtctggaggaagatgtctacgaacttcccgccaaaagttgcaagcacgc
agttggtccggttgtttctggaacctgctcagccggtcaagtagttgtcggaaacgtttg
ttgtaaagtcaaagaaaacaaaattttttcggtcgatttccaaaattatgagtggcaaaa
actggtactacccacttccgtctgcaaatcagctgttggtccagtagttggcaaaagttg
cccacaccgtcaagtagttgtaggagatgtttgttgtaaagctaaggatgtttatggtaa
cccatccaccgcaacctgccagaaagataaagatgttggacttgctatcaagggatcctg
cccagaaggaacttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTCGCCAACTGGACCGGCAATT 245 183 90 Antisense
TGGACCGGCAATTTTGGACGCCTGC 126 549 102 Antisense
GGAAGATGTCTACGAACTTCCCGCC 537 529 168 Antisense
AAGTTGCAAGCACGCAGTTGGTCCG 178 157 195 Antisense
TGGTCCGGTTGTTTCTGGAACCTGC 671 549 213 Antisense
AACCTGCTCAGCCGGTCAAGTAGTT 262 143 231 Antisense
CCACTTCCGTCTGCAAATCAGCTGT 400 275 341 Antisense
TTGCCCACACCGTCAAGTAGTTGTA 465 701 387 Antisense
TGTTTATGGTAACCCATCCACCGCA 206 559 438 Antisense
TCCACCGCAACCTGCCAGAAAGATA 381 589 454 Antisense
GGATCCTGCCCAGAAGGAACTTCTC 195 513 502 Antisense
Sequence Source Affymetrix Proprietary Database