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[184703_at]

Description F45C12.8 /REP_DB=WormBase Gene ID /WP=CE10450 /TR=O16739 /GB=AAB66207.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 20.4
(-2.5)
A 		57
(3)
A 		16.9
(-3)
A 		40.9
(0.6)
A 		40
B 14.8
(-3)
A 		40.5
(3)
A 		24.8
(-0.7)
A 		26
(-0.4)
A 		26
C 44.4
(1.1)
A 		10.3
(-3)
A 		51.6
(1.9)
A 		60.8
(3)
A 		51
avr 26.5
(-3) 		35.9
(0.5) 		31.1
(-1.3) 		42.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 45.3
(3)
A 		8.8
(-2.1)
A 		44.9
(2.9)
A 		44
(2.8)
A 		2.1
(-3)
A 		24.8
(0.2)
A 		43
B 7
(-2.4)
A 		4
(-3)
A 		34.3
(3)
A 		17.4
(-0.3)
A 		15.1
(-0.8)
A 		30.1
(2.2)
A 		30
C 64.7
(3)
A 		45.1
(1)
A 		6
(-3)
A 		44.8
(1)
A 		19.6
(-1.6)
A 		19.8
(-1.6)
A 		59
avr 39
(3) 		19.3
(-1.4) 		28.4
(0.6) 		35.4
(2.2) 		12.3
(-3) 		24.9
(-0.2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.4
(-0.8)
A 		12.4
(3)
A 		4.4
(-3)
A 		6
(-1.8)
A 		8
B 4.7
(-3)
A 		10
(3)
A 		5.8
(-1.8)
A 		5.5
(-2.1)
A 		5
C 14.7
(1.7)
A 		2.9
(-3)
A 		18
(3)
A 		10.2
(-0.1)
A 		15
avr 8.9
(1.6) 		8.4
(0.3) 		9.4
(3) 		7.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.4
(1.4)
A 		3.1
(-1.6)
A 		9.8
(2.2)
A 		11.2
(3)
A 		0.6
(-3)
A 		6
(0.1)
A 		11
B 2.4
(-2.3)
A 		1.3
(-3)
A 		8.3
(1.2)
A 		4.6
(-1)
A 		6.1
(-0.1)
A 		11.2
(3)
A 		10
C 24
(3)
A 		13.8
(0.3)
A 		1.5
(-3)
A 		9
(-1)
A 		6.3
(-1.7)
A 		6.6
(-1.6)
A 		23
avr 11.6
(3) 		6.1
(-1.5) 		6.5
(-1.2) 		8.3
(0.3) 		4.3
(-3) 		7.9
(-0) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5808
Sequence Type Exemplar sequence
Representative Public ID F45C12.8 NCBI
Target Description F45C12.8 /REP_DB=WormBase Gene ID /WP=CE10450 /TR=O16739 /GB=AAB66207.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061651
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033186 ENSEMBL cdna:SNAP chromosome:CEL140:II:1710282:1711682:1 10/11 None
GENEFINDER00000033202 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1710282:1711682:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061651 7/11 Cross Hyb Matching Probes None
F45C12.8 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1710239-1711681(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66207 Hypothetical protein F45C12.8 [Caenorhabditis elegans] ref|NP_494052.2| F45C12.8 [Caenorhabditis elegans] 1.0E-172
blast AAB66207 Hypothetical protein F45C12.8 [Caenorhabditis elegans] ref|NP_494052.2| F45C12.8 [Caenorhabditis elegans] 1.0E-140
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 3.0E-83
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 5.0E-80
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 9.0E-67
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 3.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.0E-22
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.0E-22
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184703_AT
acggttgtgcgctttcatattatgattacacgacaagctcctatgaagtttccgaaatat
ttgtggttggcgagaactacgtcgatcgttgcaatgaagatttcaaattgatgatggaaa
atcaatcggttcaattggacagtttccaacttgattttgatgataattgtgaacaaggat
tccgtgataaatgcatcgacggagtcaagaaagcactcaaatcttctagaagggtgacgt
cgaaaagtgtggaaacagacagtgttccattcccagatattgcacgactggtggccagct
tccccgctgagaagctggaaaacataggatttgacggatttgaaagcgaaggatatgagc
agctcattcgcttagatcaatggaagagagcaagaacacttcgtgctcattcgaagatga
ctatgatcgacagatccacccgctttcgcaaagctaatatctacttcaacgacatgaaca
ccagtggactgaagagcgtattcggcacccaagatgaggagcacaacaacgtctatcaaa
ctccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGTTGTGCGCTTTCATATTATGA 634 95 398 Antisense
GACAAGCTCCTATGAAGTTTCCGAA 15 361 429 Antisense
GGCGAGAACTACGTCGATCGTTGCA 30 543 466 Antisense
CAGTGTTCCATTCCCAGATATTGCA 173 209 657 Antisense
GATATTGCACGACTGGTGGCCAGCT 510 427 673 Antisense
TGAGCAGCTCATTCGCTTAGATCAA 554 567 753 Antisense
CAAGAACACTTCGTGCTCATTCGAA 347 185 788 Antisense
GACTATGATCGACAGATCCACCCGC 433 369 816 Antisense
TCCACCCGCTTTCGCAAAGCTAATA 457 589 832 Antisense
AGCGTATTCGGCACCCAAGATGAGG 138 83 892 Antisense
ACAACAACGTCTATCAAACTCCGGA 17 111 920 Antisense
Sequence Source Affymetrix Proprietary Database