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[184702_at]

Description Y47G6A.2 /REP_DB=WormBase Gene ID /WP=CE24364 /TR=Q9N3R5 /GB=AAF60675.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 0      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 49.6
(-3)
A 		56.3
(-2.4)
A 		63.3
(-1.8)
P 		117.8
(3)
P 		68
B 68.8
(-1.7)
A 		55.5
(-2.8)
A 		53.1
(-3)
A 		128.2
(3)
A 		75
C 55.1
(-1.5)
A 		40.5
(-3)
A 		82.5
(1.2)
M 		100.2
(3)
A 		60
avr 57.8
(-2.3) 		50.8
(-3) 		66.3
(-1.6) 		115.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 670
1 2 3 4 5 6 range
A 97.4
(-2.4)
A 		44.5
(-2.9)
A 		36.8
(-3)
P 		123.4
(-2.1)
P 		498.1
(1.5)
P 		646.2
(3)
P 		609
B 25.7
(-3)
A 		65
(-2.6)
A 		63.9
(-2.7)
A 		176.8
(-1.6)
P 		430.5
(0.6)
P 		695.7
(3)
P 		670
C 47.7
(-2.9)
A 		80
(-2.5)
A 		38.1
(-3)
A 		182.2
(-1.4)
P 		391.4
(1)
P 		562.8
(3)
P 		525
avr 56.9
(-2.9) 		63.2
(-2.8) 		46.3
(-3) 		160.8
(-1.8) 		440
(1) 		634.9
(3) 		589
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.1
(3)
A 		12.2
(-3)
A 		16.5
(1.4)
P 		17.2
(2.1)
P 		6
B 21.9
(0.8)
A 		13.7
(-2.4)
A 		12.3
(-3)
A 		27.3
(3)
A 		15
C 18.2
(-0.7)
A 		11.7
(-3)
A 		28.8
(3)
M 		16.9
(-1.2)
A 		17
avr 19.4
(2.2) 		12.5
(-3) 		19.2
(2) 		20.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 17.9
(-2.6)
A 		15.8
(-2.7)
A 		8
(-3)
P 		31.3
(-2.1)
P 		150.3
(2.7)
P 		157.3
(3)
P 		149
B 9
(-3)
A 		21.6
(-2.7)
A 		15.5
(-2.8)
A 		46.8
(-2.1)
P 		174.9
(1)
P 		259.4
(3)
P 		250
C 17.7
(-2.7)
A 		24.4
(-2.5)
A 		9.7
(-3)
A 		36.6
(-2.1)
P 		126.6
(0.9)
P 		188.4
(3)
P 		179
avr 14.9
(-2.9) 		20.6
(-2.7) 		11.1
(-3) 		38.2
(-2.1) 		150.6
(1.4) 		201.7
(3) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.63
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.2 NCBI
Target Description Y47G6A.2 /REP_DB=WormBase Gene ID /WP=CE24364 /TR=Q9N3R5 /GB=AAF60675.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058785 NCBI Caenorhabditis elegans INneXin family member (inx-22) (inx-22) mRNA, complete cds. 11/11 None
GENEFINDER00000034082 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3608370:3611705:1 11/11 None
SNAP00000033998 ENSEMBL cdna:SNAP chromosome:CEL140:I:3608618:3611705:1 11/11 None
Y47G6A.2 ENSEMBL cdna:known chromosome:CEL140:I:3608370:3611817:1 gene:Y47G6A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3608369-3611705(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-22
Ensembl Y47G6A.2
Entrez Gene 171929 Entrez gene
SwissProt Q9N3R5 EMBL-EBI
WormBase CE24364 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491186 INneXin family member (inx-22) [Caenorhabditis elegans] gb|AAF60675.1| Innexin protein 22 [Caenorhabditis elegans] 0.0
blast CAE66628 Hypothetical protein CBG11964 [Caenorhabditis briggsae] 1.0E-177
blast NP_491187 INneXin family member (inx-21) [Caenorhabditis elegans] gb|AAF60654.3| Innexin protein 21 [Caenorhabditis elegans] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.3E-8
Pfam IPR000990 EMBL-EBI Innexin 1.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491186.1 3 156-178,233-255,330-352
Y47G6A.2 3 156-178,233-255,330-352
GENEFINDER00000034082 3 156-178,233-255,330-352
SNAP00000033998 4 26-48,110-132,187-209,284-306
Sequence
Target Sequence 
>C. ELEGANS:184702_AT
tgaacgagttcatcatgcgctgcattctcccacagaactttgtgaattcaaaagtgttcc
tgttcctctactggtggtatattctagcaatgcttgtcagtatctactcggccgttcagt
tcaccgcgatgttgttccttccgaaatatcaacgatacgctacaaaatcccttctcccaa
cggaagaattcttcaacgaacatgccgagaaaccgacgaaaggttcactggaattctttg
tcgactatatgggaaacgacggctatctacttctccaatgtgccagcgttccgttgagtg
tcgtcagaattcggttcttcttgaactctctgtatacgattgttgttgagaagaaaaaag
aatacgaggatcagaaaccgatggtcccaagaaagcagaaaacaccgattgatcacattc
aattcgacggtcctgatcgttctggtacaaaaggaccttacaaaaatgggaaggcaatga
tcatgagcgacggagattcctacacgaaacagcttctctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGAGTTCATCATGCGCTGCAT 103 575 938 Antisense
CTGCATTCTCCCACAGAACTTTGTG 277 235 957 Antisense
TTCAAAAGTGTTCCTGTTCCTCTAC 122 685 984 Antisense
AATGCTTGTCAGTATCTACTCGGCC 665 163 1026 Antisense
GCGATGTTGTTCCTTCCGAAATATC 92 291 1063 Antisense
ACGATACGCTACAAAATCCCTTCTC 376 93 1089 Antisense
GGCTATCTACTTCTCCAATGTGCCA 39 539 1198 Antisense
GTGTCGTCAGAATTCGGTTCTTCTT 664 485 1235 Antisense
TTCTTCTTGAACTCTCTGTATACGA 225 691 1252 Antisense
CAATTCGACGGTCCTGATCGTTCTG 351 177 1357 Antisense
TCCTACACGAAACAGCTTCTCTCAC 679 591 1435 Antisense
Sequence Source Affymetrix Proprietary Database