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[184701_at]

Description T21E12.3 /REP_DB=WormBase Gene ID /WP=CE13882 /TR=P91484 /GB=AAK21469.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 2.1
(-3)
A 		9.2
(-1.6)
A 		27.1
(2.1)
A 		31.6
(3)
A 		30
B 7.2
(-3)
A 		11.4
(-2.4)
A 		17.2
(-1.7)
A 		52
(3)
A 		45
C 2.2
(-3)
A 		15.1
(-1.9)
A 		11.8
(-2.2)
A 		70.1
(3)
P 		68
avr 3.8
(-3) 		11.9
(-2) 		18.7
(-1.1) 		51.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.7
(-2.8)
A 		1.1
(-3)
A 		2.9
(-2.5)
A 		9.2
(-0.8)
A 		1.8
(-2.8)
A 		22.9
(3)
A 		22
B 2.9
(-1.9)
A 		11.4
(2)
A 		2.2
(-2.3)
A 		3.4
(-1.7)
A 		13.5
(3)
A 		0.6
(-3)
A 		13
C 3.8
(-1.9)
A 		17.6
(3)
A 		2.7
(-2.3)
A 		7
(-0.8)
A 		2.1
(-2.5)
A 		0.7
(-3)
A 		17
avr 2.8
(-2.8) 		10
(3) 		2.6
(-3) 		6.5
(0.2) 		5.8
(-0.4) 		8.1
(1.5) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.8
(-3)
A 		2
(-1.9)
A 		7.1
(3)
A 		4.6
(0.6)
A 		6
B 2.3
(-3)
A 		2.8
(-2.7)
A 		4
(-1.8)
A 		11.1
(3)
A 		9
C 0.7
(-3)
A 		4.3
(-1.1)
A 		4.1
(-1.2)
A 		11.8
(3)
P 		11
avr 1.3
(-3) 		3
(-1.7) 		5.1
(-0.1) 		9.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.9)
A 		0.6
(-2.7)
A 		2.3
(-0.7)
A 		0.6
(-2.7)
A 		5.6
(3)
A 		5
B 1
(-2.1)
A 		3.8
(1.1)
A 		0.5
(-2.7)
A 		0.9
(-2.2)
A 		5.5
(3)
A 		0.2
(-3)
A 		5
C 1.4
(-1.6)
A 		5.4
(3)
A 		0.7
(-2.4)
A 		1.4
(-1.6)
A 		0.7
(-2.4)
A 		0.2
(-3)
A 		5
avr 0.9
(-2.3) 		3.2
(3) 		0.6
(-3) 		1.5
(-0.9) 		2.3
(0.9) 		2
(0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1114
Sequence Type Exemplar sequence
Representative Public ID T21E12.3 NCBI
Target Description T21E12.3 /REP_DB=WormBase Gene ID /WP=CE13882 /TR=P91484 /GB=AAK21469.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058963 NCBI Caenorhabditis elegans T21E12.3 (T21E12.3) mRNA, complete cds. 11/11 None
SNAP00000041457 ENSEMBL cdna:SNAP chromosome:CEL140:I:4403393:4404586:1 11/11 None
GENEFINDER00000041463 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4403393:4404586:1 11/11 None
T21E12.3 ENSEMBL cdna:known chromosome:CEL140:I:4403393:4404586:1 gene:T21E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4403392-4404586(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21E12.3
Entrez Gene 188700 Entrez gene
SwissProt P91484 EMBL-EBI
WormBase CE13882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21469 Hypothetical protein T21E12.3 [Caenorhabditis elegans] ref|NP_491364.1| T21E12.3 [Caenorhabditis elegans] 2.0E-79
blast CAE67250 Hypothetical protein CBG12690 [Caenorhabditis briggsae] 6.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184701_AT
aaaccacgaggacagtaatctctttaacgagaacaatcggatgcaacttttcggttttgg
aatcgacccatcggctggaaatcaatcggcaggtccattgagatctgaaactgttaaagc
tgaaaaatgctttacaacgactggaaaagcattttgcacaaaatcaatttccaagaatca
attggcatgcacaggagacagtggtggtggagttgttcaattgattaatgaccgggttac
tgtagttggagttatttatgaaggtgttacatgtgaggcatcaactaccgatgagcagga
ctatgtggcaaacgtggcgtattattccgacgatatttgtagatatgctggaatttgtga
caagtacccggattccaaagccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCACGAGGACAGTAATCTCTTT 524 125 42 Antisense
CAATCGGATGCAACTTTTCGGTTTT 547 179 75 Antisense
TTCGGTTTTGGAATCGACCCATCGG 329 693 91 Antisense
GAATCGACCCATCGGCTGGAAATCA 206 327 101 Antisense
CAATCGGCAGGTCCATTGAGATCTG 418 181 124 Antisense
GAATCAATTGGCATGCACAGGAGAC 353 327 216 Antisense
TACATGTGAGGCATCAACTACCGAT 350 643 309 Antisense
ACTACCGATGAGCAGGACTATGTGG 372 101 325 Antisense
GACTATGTGGCAAACGTGGCGTATT 305 373 340 Antisense
GTGGCGTATTATTCCGACGATATTT 476 491 355 Antisense
CAAGTACCCGGATTCCAAAGCCATC 251 185 402 Antisense
Sequence Source Affymetrix Proprietary Database