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[184700_at]

Description W08E12.1 /REP_DB=WormBase Gene ID /WP=CE21280 /TR=Q9N5A8 /GB=AAF39990.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 3.7
(-3)
A 		10.4
(-1.2)
A 		26.2
(3)
A 		12.9
(-0.5)
A 		23
B 24.5
(2.1)
A 		27.3
(3)
A 		21.1
(0.9)
A 		9.2
(-3)
A 		18
C 17.2
(-2.2)
A 		62.8
(3)
A 		45.1
(1)
A 		9.8
(-3)
A 		53
avr 15.1
(-1.8) 		33.5
(3) 		30.8
(2.3) 		10.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 9
(-3)
A 		77
(1.8)
A 		94.6
(3)
A 		46.3
(-0.4)
A 		47.4
(-0.3)
A 		67.7
(1.1)
A 		86
B 34.9
(-3)
A 		89.7
(2.3)
A 		87.7
(2.2)
A 		41.1
(-2.4)
A 		94.9
(2.9)
A 		96.4
(3)
A 		62
C 52.4
(-3)
A 		92.1
(1.8)
A 		102.2
(3)
A 		86.4
(1.1)
A 		90.8
(1.6)
A 		100.4
(2.8)
A 		50
avr 32.1
(-3) 		86.3
(2.2) 		94.8
(3) 		57.9
(-0.5) 		77.7
(1.4) 		88.2
(2.4) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.3
(-3)
A 		2.3
(-1.9)
A 		6.9
(3)
A 		1.9
(-2.4)
A 		6
B 7.8
(3)
A 		6.7
(1.9)
A 		4.9
(0)
A 		2
(-3)
A 		6
C 5.7
(-1.5)
A 		18.1
(3)
A 		15.7
(2.1)
A 		1.7
(-3)
A 		16
avr 4.9
(-0.5) 		9
(2.8) 		9.2
(3) 		1.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 1.7
(-3)
A 		27.4
(3)
A 		20.6
(1.4)
A 		11.7
(-0.7)
A 		14.3
(-0.1)
A 		16.5
(0.5)
A 		26
B 12.1
(-2.7)
A 		29.8
(1.1)
A 		21.3
(-0.7)
A 		10.9
(-3)
A 		38.6
(3)
A 		35.9
(2.4)
A 		28
C 19.4
(-2.3)
A 		28.1
(1)
A 		26
(0.2)
A 		17.4
(-3)
A 		29.4
(1.4)
A 		33.6
(3)
A 		16
avr 11.1
(-3) 		28.4
(2.9) 		22.6
(0.9) 		13.3
(-2.3) 		27.4
(2.6) 		28.7
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10427
Sequence Type Exemplar sequence
Representative Public ID W08E12.1 NCBI
Target Description W08E12.1 /REP_DB=WormBase Gene ID /WP=CE21280 /TR=Q9N5A8 /GB=AAF39990.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067917(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067917 NCBI Caenorhabditis elegans W08E12.1 (W08E12.1) mRNA, complete cds. 11/11 None
W08E12.1 ENSEMBL cdna:known chromosome:CEL140:IV:3311272:3313147:1 gene:W08E12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023331 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3311569-3312927(+) 95.2 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E12.1
Entrez Gene 177099 Entrez gene
SwissProt Q9N5A8 EMBL-EBI
WormBase CE21280 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39990 Hypothetical protein W08E12.1 [Caenorhabditis elegans] ref|NP_500318.1| W08E12.1 [Caenorhabditis elegans] 1.0E-121
blast CAE58480 Hypothetical protein CBG01622 [Caenorhabditis briggsae] 5.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 3.3E-6
Sequence
Target Sequence 
>C. ELEGANS:184700_AT
actcgtcggttcatcacacggaatgctatcagacgctgtcatgcccatcggatcttccag
tcgagacgtcctactacaattctgtgccaccatcctatcaagatctcggccaaaccgatc
tcagccctcaattctggtgcgccgaagtggattgtgttcacgaacgttgctcaacaaagg
agattccacatgagcaatcgaagattttcgaggaaatctcgaaagaatgcgatcatatta
tgaatagcgccggcgactgcgagaaatgtcaagtagagcacgagaatggtgctcaagaag
cgattccgattaatgatctcgtcgatattgtaatgcaaactgtcgataatttgaagaagg
aaggctcgtcgaatgatgaaaccaagcttctatcccgtaaacgccagcaaaacaaagttg
cggccgcccgttatcgtgacaagcagaaggcgaaatggcaggatcttctggatcagctcg
aagccgaggaggatcgtaatcagcggctcaagcttcaagccggacatctcgagaaggagg
tcgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGTCGGTTCATCACACGGAATG 485 99 113 Antisense
AATGCTATCAGACGCTGTCATGCCC 270 165 134 Antisense
GAGACGTCCTACTACAATTCTGTGC 673 393 175 Antisense
CCATCCTATCAAGATCTCGGCCAAA 641 271 202 Antisense
CTCAATTCTGGTGCGCCGAAGTGGA 324 227 239 Antisense
TGTGTTCACGAACGTTGCTCAACAA 657 553 265 Antisense
AATAGCGCCGGCGACTGCGAGAAAT 345 171 355 Antisense
CTTCTATCCCGTAAACGCCAGCAAA 152 221 499 Antisense
GATCGTAATCAGCGGCTCAAGCTTC 86 419 604 Antisense
TCAAGCTTCAAGCCGGACATCTCGA 516 631 620 Antisense
GACATCTCGAGAAGGAGGTCGCCGA 497 369 635 Antisense
Sequence Source Affymetrix Proprietary Database