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[184699_at]

Description T06C12.12 /REP_DB=WormBase Gene ID /WP=CE16362 /TR=O18047 /GB=CAB03308.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 48
(-1.2)
A 		36.7
(-3)
A 		73.5
(3)
A 		45.4
(-1.6)
P 		37
B 62.9
(3)
A 		48.3
(-2.8)
A 		47.9
(-3)
A 		62
(2.6)
A 		15
C 53
(-3)
A 		52.8
(-3)
A 		55.9
(-2.6)
A 		102
(3)
P 		49
avr 54.6
(-0.8) 		45.9
(-3) 		59.1
(0.3) 		69.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 72.7
(2.3)
A 		78.7
(2.8)
M 		81
(3)
A 		4.5
(-3)
A 		56.8
(1.1)
A 		57.4
(1.1)
A 		77
B 44.3
(3)
A 		25.5
(-0.7)
A 		44.1
(3)
A 		37.8
(1.7)
A 		14.2
(-3)
A 		19.7
(-1.9)
A 		30
C 51.3
(2.2)
A 		55.3
(3)
P 		23.9
(-3)
A 		51.8
(2.3)
A 		30.6
(-1.7)
A 		31.2
(-1.6)
A 		31
avr 56.1
(3) 		53.2
(2.3) 		49.7
(1.4) 		31.4
(-3) 		33.9
(-2.4) 		36.1
(-1.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 17.5
(2.2)
A 		8
(-2.3)
A 		19.2
(3)
A 		6.6
(-3)
P 		13
B 20
(3)
A 		11.9
(-2.5)
A 		11.1
(-3)
A 		13.2
(-1.6)
A 		9
C 17.5
(0.2)
A 		15.2
(-3)
A 		19.5
(3)
A 		17.2
(-0.2)
P 		4
avr 18.3
(3) 		11.7
(-3) 		16.6
(1.5) 		12.3
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.4
(-0.3)
A 		28
(3)
M 		17.6
(0.7)
A 		1.1
(-3)
A 		17.2
(0.6)
A 		14
(-0.1)
A 		27
B 15.4
(3)
A 		8.5
(-1.3)
A 		10.7
(0.1)
A 		10
(-0.4)
A 		5.8
(-3)
A 		7.3
(-2.1)
A 		10
C 19
(3)
A 		16.9
(2)
P 		6.1
(-3)
A 		10.4
(-1)
A 		9.9
(-1.2)
A 		10.4
(-1)
A 		13
avr 15.9
(1.9) 		17.8
(3) 		11.5
(-0.6) 		7.2
(-3) 		11
(-0.8) 		10.6
(-1.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14613
Sequence Type Exemplar sequence
Representative Public ID T06C12.12 NCBI
Target Description T06C12.12 /REP_DB=WormBase Gene ID /WP=CE16362 /TR=O18047 /GB=CAB03308.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074571 NCBI Caenorhabditis elegans T06C12.12 (T06C12.12) mRNA, complete cds. 11/11 None
SNAP00000035469 ENSEMBL cdna:SNAP chromosome:CEL140:V:15894645:15898890:1 10/11 None
GENEFINDER00000035473 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15894645:15896994:1 11/11 None
T06C12.12 ENSEMBL cdna:known chromosome:CEL140:V:15894645:15895104:1 gene:T06C12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15894644-15895104(+) 99.12 100.0
Public Domain and Genome References
Gene Title
Ensembl T06C12.12
Entrez Gene 188171 Entrez gene
SwissProt O18047 EMBL-EBI
WormBase CE16362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03307 Hypothetical protein T06C12.11 [Caenorhabditis elegans] ref|NP_506973.1| T06C12.11 [Caenorhabditis elegans] 1.0E-131
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 1.0E-108
blast CAB03307 Hypothetical protein T06C12.11 [Caenorhabditis elegans] ref|NP_506973.1| T06C12.11 [Caenorhabditis elegans] 5.0E-87
blast AAB65391 Seven tm receptor protein 131 [Caenorhabditis elegans] ref|NP_505084.1| Seven TM Receptor family member (str-131) [Caenorhabditis elegans] 1.0E-71
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 2.0E-66
blast CAB03308 Hypothetical protein T06C12.12 [Caenorhabditis elegans] ref|NP_506972.1| T06C12.12 [Caenorhabditis elegans] 7.0E-56
blast F88939 protein C05E4.5 [imported] - Caenorhabditis elegans 6.0E-41
blast AAM15582 Hypothetical protein F59G1.1c [Caenorhabditis elegans] ref|NP_741005.1| F59G1.1c [Caenorhabditis elegans] 1.0E-11
blast AAL32225 Hypothetical protein F59G1.1b [Caenorhabditis elegans] ref|NP_495181.2| F59G1.1b [Caenorhabditis elegans] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.6E-34
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.6E-49
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.3E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.9E-111
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506972.1 1 76-98
T06C12.12 1 76-98
SNAP00000035469 4 75-97,104-126,160-182,230-252
GENEFINDER00000035473 7 84-106,126-148,163-185,205-227,250-272,320-342,357-379
Sequence
Target Sequence 
>C. ELEGANS:184699_AT
gaaacgtctattatcactaaccttagcgccaataactctacattatccagagccgtgacc
tcgtcttcattgtcgatagttcttcctgaaacaatatcagtcgatcatacttcattgtat
ctacaacaaattgctccgtaccgcccgttacaagcagttcagcctcctgctcaattcatt
cccggctcaaggagtatgtcgacaagttttgacgcatttgcaacaccttctactgtcggg
ttcttcttggtgatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGTCTATTATCACTAACCTTA 536 355 22 Antisense
AACCTTAGCGCCAATAACTCTACAT 465 147 40 Antisense
TCTACATTATCCAGAGCCGTGACCT 527 611 58 Antisense
TGACCTCGTCTTCATTGTCGATAGT 172 569 77 Antisense
ATATCAGTCGATCATACTTCATTGT 91 21 115 Antisense
CTACAACAAATTGCTCCGTACCGCC 5 225 142 Antisense
TTACAAGCAGTTCAGCCTCCTGCTC 605 683 169 Antisense
CTCAATTCATTCCCGGCTCAAGGAG 600 225 191 Antisense
GTATGTCGACAAGTTTTGACGCATT 385 455 215 Antisense
TTGACGCATTTGCAACACCTTCTAC 615 701 230 Antisense
CTGTCGGGTTCTTCTTGGTGATATA 520 225 254 Antisense
Sequence Source Affymetrix Proprietary Database