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[184698_at]

Description Y49E10.16 /REP_DB=WormBase Gene ID /WP=CE22231 /TR=Q9XTU5 /GB=CAB11552.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 25      6grp_total > 71      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3588
1 2 3 4 range
A 3528.7
(1.8)
P 		4216.7
(3)
P 		3938.2
(2.5)
P 		629
(-3)
P 		3588
B 3648.8
(2.6)
P 		3845.3
(3)
P 		3445.2
(2.2)
P 		742.9
(-3)
P 		3102
C 3114.5
(3)
P 		2490.3
(1.5)
P 		2805.3
(2.2)
P 		686.6
(-3)
P 		2428
avr 3430.7
(2.8) 		3517.4
(3) 		3396.2
(2.7) 		686.2
(-3) 		2831

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4508
1 2 3 4 5 6 range
A 3232.9
(-1.5)
P 		4796.6
(0.9)
P 		4913.7
(1.1)
P 		6212.9
(3)
P 		4381.9
(0.3)
P 		2204.8
(-3)
P 		4008
B 2613.3
(-2.6)
P 		3619.8
(-0.4)
P 		4399.7
(1.3)
P 		5180
(3)
P 		3774
(-0.1)
P 		2421.8
(-3)
P 		2758
C 2766.7
(-2.3)
P 		3677.4
(-1.1)
P 		6712.6
(3)
P 		6610.7
(2.9)
P 		4128.7
(-0.5)
P 		2227.5
(-3)
P 		4485
avr 2871
(-2.1) 		4031.3
(-0.2) 		5342
(1.9) 		6001.2
(3) 		4094.9
(-0.1) 		2284.7
(-3) 		3717
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1193
1 2 3 4 range
A 1284.8
(3)
P 		915.3
(1.1)
P 		1029.5
(1.7)
P 		92.1
(-3)
P 		1193
B 1163.6
(3)
P 		949.7
(1.7)
P 		798.3
(0.8)
P 		158.3
(-3)
P 		1005
C 1031
(3)
P 		716
(0.9)
P 		977.7
(2.7)
P 		115.8
(-3)
P 		915
avr 1159.8
(3) 		860.3
(1.3) 		935.2
(1.7) 		122.1
(-3) 		1038

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1172
1 2 3 4 5 6 range
A 596
(-2.7)
P 		1705.9
(3)
P 		1070.1
(-0.3)
P 		1575.7
(2.3)
P 		1322.3
(1)
P 		536.8
(-3)
P 		1169
B 909.3
(-2.9)
P 		1204.9
(-0.1)
P 		1068.4
(-1.4)
P 		1372
(1.5)
P 		1533.3
(3)
P 		903.1
(-3)
P 		630
C 1025.5
(-1.3)
P 		1122.1
(-0.7)
P 		1708.5
(3)
P 		1329.4
(0.6)
P 		1336
(0.7)
P 		745.7
(-3)
P 		963
avr 843.6
(-2) 		1344.3
(2.3) 		1282.3
(1.8) 		1425.7
(3) 		1397.2
(2.8) 		728.5
(-3) 		697
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7734
Sequence Type Exemplar sequence
Representative Public ID Y49E10.16 NCBI
Target Description Y49E10.16 /REP_DB=WormBase Gene ID /WP=CE22231 /TR=Q9XTU5 /GB=CAB11552.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067220 NCBI Caenorhabditis elegans Y49E10.16 (Y49E10.16) mRNA, complete cds. 11/11 None
SNAP00000016083 ENSEMBL cdna:SNAP chromosome:CEL140:III:12429819:12433636:1 11/11 None
GENEFINDER00000016110 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12430395:12433636:1 11/11 None
Y49E10.16 ENSEMBL cdna:known chromosome:CEL140:III:12430388:12433697:1 gene:Y49E10.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12430390-12433632(+) 99.39 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49E10.16
Entrez Gene 176669 Entrez gene
SwissProt Q9XTU5 EMBL-EBI
WormBase CE22231 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11552 Hypothetical protein Y49E10.16 [Caenorhabditis elegans] ref|NP_499621.1| Y49E10.16 [Caenorhabditis elegans] 0.0
blast CAE66471 Hypothetical protein CBG11750 [Caenorhabditis briggsae] 1.0E-172
blast CAB11552 Hypothetical protein Y49E10.16 [Caenorhabditis elegans] ref|NP_499621.1| Y49E10.16 [Caenorhabditis elegans] 1.0E-165
blast CAE66471 Hypothetical protein CBG11750 [Caenorhabditis briggsae] 1.0E-150
blast CAB11554 Hypothetical protein Y49E10.18 [Caenorhabditis elegans] ref|NP_499623.2| Y49E10.18 [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 5.9E-61
Pfam IPR002921 EMBL-EBI Lipase, class 3 5.9E-61
Sequence
Target Sequence 
>C. ELEGANS:184698_AT
aaaggcgttcttcgactctggaagtgtattcgaatatttctacgatgccttcctattcca
atggaatggaggtcttcaacaagatcttcgaaaactcaaataccaataccctgactatga
aatctgggttactggacactcgatgggtggtgccatcgcctcaatcgcagcttcttatat
tgtgaaaatcgggattttcaccccggataaaatcaaattagtgacactgggacagccaag
aaccggagattatgcgtttgccacgtggcacgacgcaacgttcccgtattcattccgtat
tgttcatcatagagatattgctgcacatattccaccaatggagggacaggacgagctttt
ccatcatagaactgaagtttggtacaacaacaacatgacaattggtcaaccctaccaatt
gtgcgcagaagctgatggcctctactgtagcaaccgtaacctcgactacagtggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCGTTCTTCGACTCTGGAAGT 450 121 459 Antisense
ACGATGCCTTCCTATTCCAATGGAA 10 93 500 Antisense
CTGGGTTACTGGACACTCGATGGGT 655 237 582 Antisense
GCCTCAATCGCAGCTTCTTATATTG 181 281 616 Antisense
GGAGATTATGCGTTTGCCACGTGGC 538 517 703 Antisense
TTCCCGTATTCATTCCGTATTGTTC 119 699 739 Antisense
TTGCTGCACATATTCCACCAATGGA 31 701 776 Antisense
GAGGGACAGGACGAGCTTTTCCATC 393 401 799 Antisense
AACCCTACCAATTGTGCGCAGAAGC 248 147 866 Antisense
GGCCTCTACTGTAGCAACCGTAACC 601 531 895 Antisense
AACCGTAACCTCGACTACAGTGGTG 60 143 910 Antisense
Sequence Source Affymetrix Proprietary Database