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[184697_at]

Description W10G11.6 /REP_DB=WormBase Gene ID /WP=CE14812 /TR=O44915 /GB=AAG24215.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 52.9
(0.3)
A 		5.7
(-3)
A 		59.4
(0.7)
A 		92.4
(3)
A 		87
B 66.2
(0.9)
A 		37
(-3)
A 		43.8
(-2.1)
A 		82.4
(3)
A 		45
C 42.4
(-1.2)
A 		93.5
(3)
A 		19.9
(-3)
A 		79.7
(1.9)
A 		74
avr 53.8
(-1.2) 		45.4
(-2.4) 		41
(-3) 		84.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 17.3
(-1.5)
A 		59
(3)
A 		45.6
(1.6)
A 		3.3
(-3)
A 		38.5
(0.8)
A 		45.8
(1.6)
A 		56
B 55.6
(3)
A 		36.4
(0.8)
A 		46.2
(1.9)
A 		3.3
(-3)
A 		46.2
(1.9)
A 		48.6
(2.2)
A 		52
C 31.8
(-1.4)
A 		101.5
(3)
A 		10.1
(-2.7)
A 		84
(1.9)
A 		25.8
(-1.7)
A 		5.7
(-3)
A 		96
avr 34.9
(-2.2) 		65.6
(3) 		34
(-2.4) 		30.2
(-3) 		36.8
(-1.9) 		33.4
(-2.5) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.3
(3)
A 		1.2
(-3)
A 		15.5
(1.7)
A 		13.5
(1.1)
A 		18
B 21.1
(3)
A 		9.1
(-3)
A 		10.2
(-2.5)
A 		17.5
(1.2)
A 		12
C 14
(-0.9)
A 		26.9
(3)
A 		6.9
(-3)
A 		13.4
(-1.1)
A 		20
avr 18.1
(3) 		12.4
(-1.8) 		10.9
(-3) 		14.8
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.2
(-2.3)
A 		21
(3)
A 		9.9
(-0.3)
A 		0.8
(-3)
A 		11.6
(0.2)
A 		11.2
(0.1)
A 		20
B 19.4
(3)
A 		12.1
(0.6)
A 		11.2
(0.3)
A 		0.9
(-3)
A 		18.8
(2.8)
A 		18.1
(2.6)
A 		19
C 11.8
(-1)
A 		31
(3)
A 		2.6
(-2.9)
A 		16.9
(0.1)
A 		8.3
(-1.7)
A 		1.9
(-3)
A 		29
avr 11.5
(-0.9) 		21.4
(3) 		7.9
(-2.3) 		6.2
(-3) 		12.9
(-0.4) 		10.4
(-1.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5835
Sequence Type Exemplar sequence
Representative Public ID W10G11.6 NCBI
Target Description W10G11.6 /REP_DB=WormBase Gene ID /WP=CE14812 /TR=O44915 /GB=AAG24215.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062180 NCBI Caenorhabditis elegans W10G11.6 (W10G11.6) mRNA, complete cds. 11/11 None
SNAP00000013262 ENSEMBL cdna:SNAP chromosome:CEL140:II:3569424:3570900:-1 11/11 None
GENEFINDER00000013281 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3567994:3571021:-1 11/11 None
W10G11.6 ENSEMBL cdna:known chromosome:CEL140:II:3569424:3570900:-1 gene:W10G11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025154 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025160 1/11 Cross Hyb Matching Probes None
F36D3.11 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3569422-3570899(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.6
Entrez Gene 189339 Entrez gene
SwissProt O44915 EMBL-EBI
WormBase CE14812 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 0.0
blast AAG24214 Hypothetical protein W10G11.5 [Caenorhabditis elegans] ref|NP_494580.1| W10G11.5 [Caenorhabditis elegans] 1.0E-137
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 1.0E-115
blast AAG24216 Hypothetical protein W10G11.7 [Caenorhabditis elegans] ref|NP_494584.1| W10G11.7 [Caenorhabditis elegans] 7.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013281 1 798-820
Sequence
Target Sequence 
>C. ELEGANS:184697_AT
aactgtgttgccacttttattccggcaaacatagctcggcaaacgcgcggttatgcttgt
ggaaggcataatcggtgtgaacctggatggagattctttaaccggccttctgggggatgg
tgcatcagggtgttcaccggattccatgcagcaaaagctgatgctgaagctgcttgtcaa
gctgttggagcaacactctccgggcttcaaaatccacaagaagctgcgtatattcaatcg
tctcttctcggccaaatcccacaacgcagtgcttcggtatgggttggcattcagcgtacg
gctgcttgcatgaatcagccaccgtctgccgcgtgcagcagaaccaccgccttccgatgg
accgacaactcggcaaccggaactgctggttttgtattccaacctgggcagcctgacaac
atccgattgaatcaaaattgtgcactacttcttgcttcggaaacgccgaccattaccgca
agaggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGTGTTGCCACTTTTATTCCGG 519 143 703 Antisense
GCAAACGCGCGGTTATGCTTGTGGA 45 319 741 Antisense
TGTTCACCGGATTCCATGCAGCAAA 653 561 833 Antisense
CTCTCCGGGCTTCAAAATCCACAAG 606 231 898 Antisense
CCCACAACGCAGTGCTTCGGTATGG 249 257 960 Antisense
GCATTCAGCGTACGGCTGCTTGCAT 688 307 989 Antisense
TGCTTGCATGAATCAGCCACCGTCT 221 579 1005 Antisense
AACTCGGCAACCGGAACTGCTGGTT 498 141 1069 Antisense
TATTCCAACCTGGGCAGCCTGACAA 87 665 1097 Antisense
GCACTACTTCTTGCTTCGGAAACGC 461 315 1144 Antisense
CGCCGACCATTACCGCAAGAGGAAC 333 257 1166 Antisense
Sequence Source Affymetrix Proprietary Database