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[184696_at]

Description Y47D9A.4 /REP_DB=WormBase Gene ID /WP=CE22068 /TR=Q9N4V7 /GB=AAF60644.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 13.7
(-2.3)
A 		5.3
(-3)
A 		45.2
(0.4)
A 		75.2
(3)
A 		70
B 41.5
(3)
A 		19.9
(-3)
A 		24.9
(-1.6)
A 		40.3
(2.7)
A 		22
C 3.3
(-3)
A 		19.5
(1.5)
A 		12
(-0.6)
A 		24.8
(3)
A 		22
avr 19.5
(-2.1) 		14.9
(-3) 		27.4
(-0.6) 		46.8
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 35.7
(2.7)
A 		19.4
(-0.5)
A 		7.1
(-3)
A 		37.2
(3)
A 		27.8
(1.1)
A 		11.1
(-2.2)
A 		30
B 25.8
(-0)
A 		27.6
(0.7)
A 		22.3
(-1.4)
A 		19.4
(-2.5)
A 		18.2
(-3)
A 		33.5
(3)
A 		15
C 10.4
(-1.5)
A 		26.3
(2.4)
A 		6.4
(-2.4)
A 		4.1
(-3)
A 		28.6
(3)
A 		16.9
(0.1)
A 		25
avr 24
(2.6) 		24.4
(2.8) 		11.9
(-3) 		20.2
(0.8) 		24.9
(3) 		20.5
(1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5
(-0.8)
A 		1.1
(-3)
A 		11.8
(3)
A 		11
(2.6)
A 		11
B 13.2
(3)
A 		4.9
(-3)
A 		5.8
(-2.3)
A 		8.6
(-0.3)
A 		8
C 1.1
(-3)
A 		5.6
(3)
A 		4.2
(1.1)
A 		4.2
(1.1)
A 		5
avr 6.4
(0.8) 		3.9
(-3) 		7.3
(2.1) 		7.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.6
(0.9)
A 		6.9
(1.1)
A 		1.5
(-3)
A 		9.4
(3)
A 		8.4
(2.2)
A 		2.7
(-2.1)
A 		8
B 9
(0.2)
A 		9.2
(0.3)
A 		5.4
(-2.8)
A 		5.1
(-3)
A 		7.4
(-1.1)
A 		12.5
(3)
A 		7
C 3.9
(-0.8)
A 		8
(2.1)
A 		1.6
(-2.4)
A 		0.8
(-3)
A 		9.2
(3)
A 		5.7
(0.5)
A 		8
avr 6.5
(1) 		8
(2.7) 		2.8
(-3) 		5.1
(-0.5) 		8.3
(3) 		7
(1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.869
Sequence Type Exemplar sequence
Representative Public ID Y47D9A.4 NCBI
Target Description Y47D9A.4 /REP_DB=WormBase Gene ID /WP=CE22068 /TR=Q9N4V7 /GB=AAF60644.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058944
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y47D9A.4 ENSEMBL cdna:known chromosome:CEL140:I:4273915:4274743:-1 gene:Y47D9A.4 None
NM_058944 NCBI Caenorhabditis elegans Y47D9A.4 (Y47D9A.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4273914-4274743(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D9A.4
Entrez Gene 189990 Entrez gene
SwissProt Q9N4V7 EMBL-EBI
WormBase CE34399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60644 Hypothetical protein Y47D9A.4 [Caenorhabditis elegans] ref|NP_491345.2| Y47D9A.4 [Caenorhabditis elegans] 3.0E-35
blast CAA94826 Hypothetical protein F46B6.10 [Caenorhabditis elegans] ref|NP_505529.1| F46B6.10 [Caenorhabditis elegans] 9.0E-23
blast CAE74537 Hypothetical protein CBG22294 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:184696_AT
tggaaatcactccacagggtaccacaccattaccttgttcaagacagtcgaggatgaggg
atgagaacggttcaacaaggacaagagggggtagtagaggaattaaaagcagtaaagagc
cagattcgacaacattttctatcttttcaaaagtgtcttttgttgaattttgtaactttc
cgcgggtctcgaaacggacgaagtttcgcagctaccgtacacgcaagtatttcgcaatat
ctttttacaaccaaaatggaatttttccgtttaaaattttgaaaaaaaataagcgaatta
taaaaggtacattcggggatgatgcattcaaagaaatggcgaaacgtcttgcgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAATCACTCCACAGGGTACCAC 668 547 77 Antisense
GGTACCACACCATTACCTTGTTCAA 430 505 94 Antisense
AAGAGCCAGATTCGACAACATTTTC 171 155 191 Antisense
TCGACAACATTTTCTATCTTTTCAA 533 601 202 Antisense
TGTTGAATTTTGTAACTTTCCGCGG 272 559 237 Antisense
TCCGCGGGTCTCGAAACGGACGAAG 368 595 255 Antisense
CGGACGAAGTTTCGCAGCTACCGTA 575 241 271 Antisense
GCTACCGTACACGCAAGTATTTCGC 599 301 287 Antisense
ATTTCGCAATATCTTTTTACAACCA 23 17 305 Antisense
GGTACATTCGGGGATGATGCATTCA 80 505 382 Antisense
GAAATGGCGAAACGTCTTGCGAAGA 210 361 409 Antisense
Sequence Source Affymetrix Proprietary Database