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[184695_at]

Description Y116A8A.3 /REP_DB=WormBase Gene ID /WP=CE23307 /TR=Q9U2W0 /GB=CAB55165.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 11.2
(-2.5)
A 		15.1
(-1.9)
A 		7.8
(-3)
A 		48.4
(3)
A 		41
B 15
(3)
A 		9.4
(-0.5)
A 		5.5
(-3)
A 		5.9
(-2.7)
A 		10
C 18.4
(-1.8)
A 		7.6
(-2.6)
A 		2
(-3)
A 		83.7
(3)
A 		82
avr 14.9
(-1.6) 		10.7
(-2.2) 		5.1
(-3) 		46
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 27.2
(1.3)
A 		3.2
(-2.9)
A 		37.1
(3)
A 		6.2
(-2.4)
A 		2.7
(-3)
A 		8.8
(-1.9)
A 		34
B 6.8
(-2.1)
A 		15.9
(0.7)
A 		23.2
(3)
A 		6.4
(-2.3)
A 		4
(-3)
A 		9.3
(-1.3)
A 		19
C 8.2
(-1.9)
A 		39.9
(3)
A 		9.5
(-1.7)
A 		32.1
(1.8)
A 		1.4
(-3)
A 		4.4
(-2.5)
A 		39
avr 14.1
(0.3) 		19.7
(2) 		23.3
(3) 		14.9
(0.6) 		2.7
(-3) 		7.5
(-1.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.1
(-0.5)
A 		3.3
(-1.5)
A 		2
(-3)
A 		7.1
(3)
A 		5
B 4.8
(3)
A 		2.3
(-1.3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		4
C 6.1
(-0.6)
A 		2.2
(-2.3)
A 		0.7
(-3)
A 		14.1
(3)
A 		13
avr 5
(0.6) 		2.6
(-1.7) 		1.3
(-3) 		7.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5
(0.5)
A 		1.1
(-2.8)
A 		8.1
(3)
A 		1.6
(-2.3)
A 		0.8
(-3)
A 		2.1
(-1.9)
A 		7
B 2.4
(-1.8)
A 		5.3
(2.6)
A 		5.6
(3)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		3.5
(-0.2)
A 		4
C 3
(-1.7)
A 		12.2
(3)
A 		2.4
(-2)
A 		6.5
(0.1)
A 		0.4
(-3)
A 		1.5
(-2.4)
A 		12
avr 3.5
(-0.1) 		6.2
(3) 		5.4
(2.1) 		3.3
(-0.3) 		0.9
(-3) 		2.4
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10325
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.3 NCBI
Target Description Y116A8A.3 /REP_DB=WormBase Gene ID /WP=CE23307 /TR=Q9U2W0 /GB=CAB55165.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070590 NCBI Caenorhabditis elegans Y116A8A.3 (Y116A8A.3) mRNA, complete cds. 11/11 A 
SNAP00000018646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16804986:16806399:-1 11/11 None
Y116A8A.3 ENSEMBL cdna:known chromosome:CEL140:IV:16804986:16806399:-1 gene:Y116A8A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018655 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16804991-16806405(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8A.3
Entrez Gene 190984 Entrez gene
SwissProt Q9U2W0 EMBL-EBI
WormBase CE23307 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55165 Hypothetical protein Y116A8A.3 [Caenorhabditis elegans] ref|NP_502991.1| Y116A8A.3 [Caenorhabditis elegans] 1.0E-111
blast CAB55161 Hypothetical protein Y116A8A.1 [Caenorhabditis elegans] ref|NP_502990.1| Y116A8A.1 [Caenorhabditis elegans] 6.0E-76
blast CAB02970 Hypothetical protein F17B5.2 [Caenorhabditis elegans] ref|NP_493309.1| F17B5.2 [Caenorhabditis elegans] 4.0E-58
Sequence
Target Sequence 
>C. ELEGANS:184695_AT
aaaacttattcaactcatcgcctgtttctttttactgattccagcagcgtcggtgtttat
acgtgatccttcctttagttcatcatcagaggaaggttatggtagaggaaaacatcatca
tgggggacatcatagtccaacgccgaacccatgtgaagttggttggtacgcttttcatag
accacaaggggtttggtgtgttaaggtagtagcatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTTATTCAACTCATCGCCTGT 126 131 18 Antisense
CTGTTTCTTTTTACTGATTCCAGCA 101 239 39 Antisense
GATTCCAGCAGCGTCGGTGTTTATA 585 433 54 Antisense
GGTGTTTATACGTGATCCTTCCTTT 391 487 69 Antisense
ATCCTTCCTTTAGTTCATCATCAGA 554 39 83 Antisense
GAGGAAAACATCATCATGGGGGACA 280 405 122 Antisense
GGGGGACATCATAGTCCAACGCCGA 110 499 139 Antisense
AACGCCGAACCCATGTGAAGTTGGT 690 145 156 Antisense
GAAGTTGGTTGGTACGCTTTTCATA 507 337 172 Antisense
GGTACGCTTTTCATAGACCACAAGG 17 505 182 Antisense
GGTGTGTTAAGGTAGTAGCATCAAA 378 499 212 Antisense
Sequence Source Affymetrix Proprietary Database