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[184694_at]

Description F17E9.11 /REP_DB=WormBase Gene ID /WP=CE07076 /TR=O61518 /GB=AAC05110.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      6grp_highest_nonorm > 40      6grp_total > 07      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 10      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 100.8
(3)
P 		89.2
(1.7)
P 		48.3
(-3)
P 		51.5
(-2.6)
A 		53
B 113.3
(3)
P 		105.1
(2.5)
P 		85.3
(1.2)
P 		20.7
(-3)
A 		93
C 136.9
(3)
P 		98.7
(0.3)
P 		77.5
(-1.2)
P 		51.1
(-3)
A 		86
avr 117
(3) 		97.7
(1.5) 		70.4
(-0.7) 		41.1
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 903
1 2 3 4 5 6 range
A 1096.9
(3)
P 		480.8
(-1.3)
P 		555.2
(-0.8)
P 		539.9
(-0.9)
P 		369.4
(-2.1)
P 		240
(-3)
P 		857
B 1143
(3)
P 		589
(-0.9)
P 		647.3
(-0.5)
P 		446.3
(-1.9)
P 		382
(-2.4)
P 		297.7
(-3)
P 		845
C 954.5
(3)
P 		548.2
(-0.8)
P 		403.3
(-2.2)
P 		503.7
(-1.2)
P 		316.2
(-3)
P 		339.1
(-2.8)
P 		638
avr 1064.8
(3) 		539.3
(-1.1) 		535.3
(-1.1) 		496.6
(-1.4) 		355.9
(-2.5) 		292.3
(-3) 		773
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 36.7
(3)
P 		19.4
(-0.6)
P 		12.6
(-2)
P 		7.5
(-3)
A 		29
B 36.1
(3)
P 		26
(1.1)
P 		19.8
(-0.1)
P 		4.4
(-3)
A 		32
C 45.3
(3)
P 		28.4
(0.2)
P 		27
(0)
P 		8.6
(-3)
A 		37
avr 39.4
(3) 		24.6
(0.3) 		19.8
(-0.6) 		6.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 202.2
(3)
P 		171
(1.7)
P 		120.9
(-0.4)
P 		136.9
(0.3)
P 		111.5
(-0.8)
P 		58.4
(-3)
P 		144
B 397.7
(3)
P 		196
(-1.2)
P 		157.2
(-2)
P 		118.2
(-2.8)
P 		155.2
(-2.1)
P 		111
(-3)
P 		287
C 353.8
(3)
P 		167.3
(-1.4)
P 		102.6
(-3)
P 		101.3
(-3)
P 		102.3
(-3)
P 		113.5
(-2.7)
P 		253
avr 317.9
(3) 		178.1
(-0.8) 		126.9
(-2.1) 		118.8
(-2.3) 		123
(-2.2) 		94.3
(-3) 		224
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8791
Sequence Type Exemplar sequence
Representative Public ID F17E9.11 NCBI
Target Description F17E9.11 /REP_DB=WormBase Gene ID /WP=CE07076 /TR=O61518 /GB=AAC05110.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069004 NCBI Caenorhabditis elegans LYSozyme family member (lys-10) (lys-10) mRNA, complete cds. 11/11 None
SNAP00000000478 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8332808:8333500:1 11/11 None
GENEFINDER00000000495 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8332808:8333500:1 11/11 None
F17E9.11 ENSEMBL cdna:known chromosome:CEL140:IV:8332808:8333500:1 gene:F17E9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8332813-8333506(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-10
Ensembl F17E9.11
Entrez Gene 184622 Entrez gene
SwissProt O61518 EMBL-EBI
WormBase CE07076 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9253 peptidoglycan catabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3796 lysozyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC05110 Lysozyme protein 10 [Caenorhabditis elegans] ref|NP_501405.1| LYSozyme family member (lys-10) [Caenorhabditis elegans] 1.0E-129
blast CAA97797 Hypothetical protein F58B3.1 [Caenorhabditis elegans] ref|NP_502192.1| LYSozyme family member (lys-4) [Caenorhabditis elegans] 1.0E-101
blast CAE62088 Hypothetical protein CBG06112 [Caenorhabditis briggsae] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:184694_AT
catttttccttgtttggcatctcattgtccatctgctgcaaaccaagttaaagaaactct
cgatgctctgaagagcgctggtactcatgtatccaccctttggttggatattgaacgtct
tgcatggcctgctaatcatgctcataaccgtgctttcattgaagaaatggttaaagaagc
cgaggctagaaaacaacatgttggaatctacagtaactactacaactggcaagatatagt
tggattggattaccatggtcaatctcatttaatgctttggtgggcaacatacgatggaat
caaggatttctcaaaattcgtagctttcggcggatggaaaaaaccaacaattcatcagtg
gcatggaactacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTTCCTTGTTTGGCATCTCAT 407 215 288 Antisense
TCATTGTCCATCTGCTGCAAACCAA 453 619 309 Antisense
GAAACTCTCGATGCTCTGAAGAGCG 345 357 340 Antisense
AGAGCGCTGGTACTCATGTATCCAC 342 69 359 Antisense
CTCATGTATCCACCCTTTGGTTGGA 493 227 371 Antisense
ATATTGAACGTCTTGCATGGCCTGC 32 19 395 Antisense
ATGGCCTGCTAATCATGCTCATAAC 378 53 411 Antisense
TGCTCATAACCGTGCTTTCATTGAA 629 579 426 Antisense
GGATTACCATGGTCAATCTCATTTA 389 509 534 Antisense
AATTCGTAGCTTTCGGCGGATGGAA 647 173 602 Antisense
AATTCATCAGTGGCATGGAACTACC 229 177 636 Antisense
Sequence Source Affymetrix Proprietary Database