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[184693_s_at]

Description C32H11.11 /REP_DB=WormBase Gene ID /WP=CE19715 /TR=Q9XTN7 /GB=CAB05137.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 17.2
(-2.7)
A 		282
(3)
P 		207.9
(1.4)
P 		3.2
(-3)
A 		279
B 7.6
(-3)
A 		171.7
(2.4)
P 		191.2
(3)
P 		26.8
(-2.4)
A 		184
C 4.7
(-3)
A 		200.8
(2.5)
P 		219.5
(3)
P 		99.2
(-0.4)
P 		215
avr 9.8
(-3) 		218.2
(3) 		206.2
(2.7) 		43.1
(-2) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 62.9
(-3)
A 		101.8
(-1.9)
P 		150.8
(-0.5)
P 		269.9
(3)
P 		257.5
(2.6)
P 		146.3
(-0.6)
P 		207
B 12.1
(-3)
A 		166.7
(-0.3)
P 		95
(-1.6)
P 		230.7
(0.8)
P 		359.6
(3)
P 		135.4
(-0.9)
P 		348
C 24
(-3)
A 		213.8
(1.4)
P 		105
(-1.1)
P 		283.2
(3)
P 		281.9
(3)
P 		90.9
(-1.5)
P 		259
avr 33
(-3) 		160.8
(-0.1) 		116.9
(-1.1) 		261.3
(2.1) 		299.7
(3) 		124.2
(-0.9) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 6.3
(-2.4)
A 		61.2
(3)
P 		54.4
(2.3)
P 		0.5
(-3)
A 		61
B 2.4
(-3)
A 		42.4
(2.7)
P 		44.3
(3)
P 		5.7
(-2.5)
A 		42
C 1.5
(-3)
A 		57.7
(1.5)
P 		76.5
(3)
P 		16.7
(-1.8)
P 		75
avr 3.4
(-3) 		53.8
(2.5) 		58.4
(3) 		7.6
(-2.5) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 11.6
(-3)
A 		36.2
(-0.8)
P 		32.8
(-1.1)
P 		68.5
(2.2)
P 		77.7
(3)
P 		35.6
(-0.8)
P 		66
B 4.2
(-3)
A 		55.5
(-0.8)
P 		23.1
(-2.2)
P 		61.1
(-0.6)
P 		146.1
(3)
P 		50.5
(-1)
P 		142
C 8.9
(-3)
A 		65.2
(1.1)
P 		26.7
(-1.7)
P 		57
(0.5)
P 		91.2
(3)
P 		30.4
(-1.4)
P 		82
avr 8.2
(-3) 		52.3
(-0.3) 		27.5
(-1.8) 		62.2
(0.3) 		105
(3) 		38.8
(-1.1) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184693_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10085
Sequence Type Exemplar sequence
Representative Public ID C32H11.11 NCBI
Target Description C32H11.11 /REP_DB=WormBase Gene ID /WP=CE19715 /TR=Q9XTN7 /GB=CAB05137.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070069(11), NM_070072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070069 NCBI Caenorhabditis elegans C32H11.8 (C32H11.8) mRNA, complete cds. 11/11 None
NM_070072 NCBI Caenorhabditis elegans C32H11.11 (C32H11.11) mRNA, complete cds. 11/11 None
SNAP00000038558 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12933898:12934741:-1 11/11 None
SNAP00000038561 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12938198:12939041:1 11/11 None
GENEFINDER00000038573 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12938198:12939041:1 11/11 None
GENEFINDER00000038576 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12933898:12934741:-1 11/11 None
C32H11.8 ENSEMBL cdna:known chromosome:CEL140:IV:12933898:12934741:-1 gene:C32H11.8 11/11 None
C32H11.11 ENSEMBL cdna:known chromosome:CEL140:IV:12938198:12939041:1 gene:C32H11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12938203-12939047(+) 100.0 100.0
chrIV:12933903-12934747(-) 100.0 100.0
chrIV:12925911-12926712(-) 93.37 93.37
Public Domain and Genome References
Gene Title

Ensembl C32H11.8
C32H11.11
Entrez Gene 183132 Entrez gene
183135 Entrez gene
SwissProt Q9XTN7 EMBL-EBI
WormBase CE19715 Wormbase
CE19715 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05137 Hypothetical protein C32H11.11 [Caenorhabditis elegans] emb|CAB05134.1| Hypothetical protein C32H11.8 [Caenorhabditis elegans] ref|NP_502473.1| C32H11.11 [Caenorhabditis elegans] ref|NP_502470.1| C32H11.8 [Caenorhabditis elegans] 8.0E-97
blast CAB05133 Hypothetical protein C32H11.6 [Caenorhabditis elegans] ref|NP_502468.1| C32H11.6 [Caenorhabditis elegans] 8.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 4.5E-15
Sequence
Target Sequence 
>C. ELEGANS:184693_S_AT
cctctctgctataattttcaccattgtggcttctgctgcacctacttctgctcctgctct
cacagtagatgaagcgggggaagcggttttccaaaatttaaccgaaaaagctatatttgg
ctttctccaaatcgattccgatccgacattgactattgccgagatcgaccaaaaaggcgc
tgaatgggcggagaagcacggaattgctgacaaatgggctgtattctattcaacgtggca
agccagagaggaaaagtttaacaaaataaaaaccactgtatttgaaagacttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTCTGCTATAATTTTCACCATT 685 267 27 Antisense
TAATTTTCACCATTGTGGCTTCTGC 254 635 38 Antisense
TGCTCCTGCTCTCACAGTAGATGAA 37 583 75 Antisense
AGTAGATGAAGCGGGGGAAGCGGTT 323 1 90 Antisense
AAAAGCTATATTTGGCTTTCTCCAA 108 133 132 Antisense
TTGGCTTTCTCCAAATCGATTCCGA 642 703 143 Antisense
TTCTCCAAATCGATTCCGATCCGAC 410 691 149 Antisense
AATCGATTCCGATCCGACATTGACT 67 169 156 Antisense
ATTCCGATCCGACATTGACTATTGC 553 5 161 Antisense
CCGAGATCGACCAAAAAGGCGCTGA 83 255 185 Antisense
ACCACTGTATTTGAAAGACTTCCAT 238 83 298 Antisense
Sequence Source Affymetrix Proprietary Database