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[184692_at]

Description C42C1.12 /REP_DB=WormBase Gene ID /WP=CE16918 /TR=O44968 /GB=AAB97553.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 87      6grp_total > 86      4grp_total > 32      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 620
1 2 3 4 range
A 842.6
(-3)
P 		1127.9
(1.1)
P 		1256.2
(3)
P 		1237
(2.7)
P 		414
B 944.2
(-3)
P 		1274.3
(0.8)
P 		1462.9
(3)
P 		1201.2
(-0)
P 		519
C 989.8
(-3)
P 		1211.8
(0.4)
P 		1279.3
(1.4)
P 		1383.8
(3)
P 		394
avr 925.5
(-3) 		1204.7
(1.1) 		1332.8
(3) 		1274
(2.1) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1164
1 2 3 4 5 6 range
A 787.3
(-3)
P 		1042.5
(-0.7)
P 		1440.4
(3)
P 		1301.5
(1.7)
P 		1166.8
(0.5)
P 		1297.1
(1.7)
P 		653
B 880.9
(-3)
P 		1115.3
(-0.9)
P 		1389.9
(1.6)
P 		1012.6
(-1.8)
P 		1482.7
(2.4)
P 		1551.6
(3)
P 		671
C 745.4
(-3)
P 		1044.3
(-1.5)
P 		941
(-2)
P 		1301.8
(-0.1)
P 		1211.3
(-0.6)
P 		1909.6
(3)
P 		1164
avr 804.5
(-3) 		1067.4
(-1) 		1257.1
(0.5) 		1205.3
(0.1) 		1286.9
(0.7) 		1586.1
(3) 		782
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 306.8
(2.1)
P 		244.8
(-0.4)
P 		328.4
(3)
P 		181.1
(-3)
P 		147
B 301.1
(0.3)
P 		314.7
(1.2)
P 		339
(3)
P 		256
(-3)
P 		83
C 327.7
(-0.3)
P 		348.4
(0.2)
P 		445.9
(3)
P 		233.3
(-3)
P 		213
avr 311.9
(0.6) 		302.6
(0.2) 		371.1
(3) 		223.5
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 145.1
(-3)
P 		370.8
(3)
P 		313.7
(1.5)
P 		330.1
(1.9)
P 		352.1
(2.5)
P 		315.8
(1.5)
P 		226
B 306.5
(-2.3)
P 		371.2
(-1.2)
P 		337.5
(-1.8)
P 		268.2
(-3)
P 		602.4
(3)
P 		578.6
(2.6)
P 		334
C 276.3
(-2.4)
P 		318.7
(-1.8)
P 		239.5
(-3)
P 		261.8
(-2.7)
P 		392
(-0.7)
P 		639.2
(3)
P 		400
avr 242.6
(-3) 		353.6
(-0.5) 		296.9
(-1.8) 		286.7
(-2) 		448.8
(1.6) 		511.2
(3) 		269
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10332
Sequence Type Exemplar sequence
Representative Public ID C42C1.12 NCBI
Target Description C42C1.12 /REP_DB=WormBase Gene ID /WP=CE16918 /TR=O44968 /GB=AAB97553.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069935 NCBI Caenorhabditis elegans C42C1.12 (C42C1.12) mRNA, complete cds. 11/11 None
SNAP00000027939 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12281716:12282175:-1 11/11 None
GENEFINDER00000027955 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12281716:12282175:-1 11/11 None
C42C1.12 ENSEMBL cdna:known chromosome:CEL140:IV:12281716:12282178:-1 gene:C42C1.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12281721-12282181(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.12
Entrez Gene 178177 Entrez gene
SwissProt O44968 EMBL-EBI
WormBase CE16918 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_502336 C42C1.12 [Caenorhabditis elegans] gb|AAB97553.1| Hypothetical protein C42C1.12 [Caenorhabditis elegans] 4.0E-65
blast CAE62218 Hypothetical protein CBG06269 [Caenorhabditis briggsae] 2.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502336.1 1 28-50
C42C1.12 1 28-50
SNAP00000027939 1 28-50
GENEFINDER00000027955 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:184692_AT
aatccaccgctccagaatgcaaaattattcggacttttcaagaatccagatcctggtttt
acgcaaacaggaatttcaatgttcacaaattttgtgctcaccaatatgtttgtgtatgga
gtgacaggacgtgcgaaattggcgtatgcactcagtatgatttccattccctgctcggtc
attataagtgttcgagattcacaaaaagattatgataaatggaaagagatgcgattacta
cgtctgaaaggtgtaccagaacgattcatgccgtacaaatgcaagtacgactggtcagac
tat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCACCGCTCCAGAATGCAAAAT 526 167 40 Antisense
GACTTTTCAAGAATCCAGATCCTGG 117 373 71 Antisense
ATCCAGATCCTGGTTTTACGCAAAC 560 39 83 Antisense
TTGTGCTCACCAATATGTTTGTGTA 348 709 131 Antisense
GTATGGAGTGACAGGACGTGCGAAA 471 455 153 Antisense
AATTGGCGTATGCACTCAGTATGAT 388 177 176 Antisense
TCAGTATGATTTCCATTCCCTGCTC 554 623 191 Antisense
ATTCCCTGCTCGGTCATTATAAGTG 591 5 205 Antisense
GATGCGATTACTACGTCTGAAAGGT 533 413 267 Antisense
GGTGTACCAGAACGATTCATGCCGT 583 499 289 Antisense
ATGCAAGTACGACTGGTCAGACTAT 12 45 318 Antisense
Sequence Source Affymetrix Proprietary Database