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[184691_at]

Description Y39A3B.3 /REP_DB=WormBase Gene ID /WP=CE21644 /TR=Q9N518 /GB=AAF60515.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 16.7
(-2.4)
A 		15.1
(-3)
A 		23.9
(0.1)
A 		32
(3)
A 		17
B 33.6
(3)
A 		1.9
(-3)
A 		6.1
(-2.2)
A 		8
(-1.8)
A 		32
C 12.3
(-3)
A 		15
(-2.7)
A 		17
(-2.4)
A 		62.3
(3)
P 		50
avr 20.9
(-0.4) 		10.7
(-3) 		15.7
(-1.7) 		34.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 12.9
(-0.2)
A 		16.2
(0.8)
A 		24
(3)
P 		3
(-3)
A 		10.2
(-0.9)
A 		15
(0.4)
A 		21
B 1.9
(-3)
A 		4
(-2.5)
A 		25.8
(3)
A 		23.4
(2.4)
A 		18.4
(1.1)
M 		1.9
(-3)
A 		24
C 20.6
(1)
A 		30.5
(3)
P 		19.1
(0.7)
A 		25.7
(2)
A 		8.8
(-1.4)
A 		0.9
(-3)
A 		30
avr 11.8
(-0.9) 		16.9
(0.9) 		23
(3) 		17.4
(1) 		12.5
(-0.7) 		5.9
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.1
(2.6)
A 		3.3
(-3)
A 		6.3
(3)
A 		4.7
(-0.2)
A 		3
B 10.7
(3)
A 		0.5
(-3)
A 		1.4
(-2.5)
A 		1.7
(-2.3)
A 		10
C 4.1
(-3)
A 		4.3
(-2.8)
A 		5.9
(-1.3)
A 		10.5
(3)
P 		6
avr 7
(3) 		2.7
(-3) 		4.5
(-0.5) 		5.6
(1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.4
(-1)
A 		5.7
(3)
A 		5.2
(2.4)
P 		0.8
(-3)
A 		3.1
(-0.2)
A 		3.7
(0.6)
A 		5
B 0.7
(-3)
A 		1.3
(-2.5)
A 		6.3
(1.9)
A 		6.2
(1.9)
A 		7.5
(3)
M 		0.7
(-3)
A 		7
C 7.6
(1.9)
A 		9.3
(3)
P 		4.9
(0.1)
A 		5.2
(0.3)
A 		2.8
(-1.3)
A 		0.3
(-3)
A 		9
avr 3.6
(0.1) 		5.4
(2.8) 		5.5
(3) 		4.1
(0.8) 		4.5
(1.5) 		1.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8336
Sequence Type Exemplar sequence
Representative Public ID Y39A3B.3 NCBI
Target Description Y39A3B.3 /REP_DB=WormBase Gene ID /WP=CE21644 /TR=Q9N518 /GB=AAF60515.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065087 NCBI Caenorhabditis elegans Y39A3B.3 (Y39A3B.3) mRNA, complete cds. 11/11 None
Y39A3B.3 ENSEMBL cdna:known chromosome:CEL140:III:1985097:1987454:1 gene:Y39A3B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018249 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1985096-1987454(+) 51.49 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3B.3
Entrez Gene 189723 Entrez gene
SwissProt Q9N518 EMBL-EBI
WormBase CE32522 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497488 Y39A3B.3 [Caenorhabditis elegans] gb|AAF60515.2| Hypothetical protein Y39A3B.3 [Caenorhabditis elegans] 3.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497488.2 1 187-209
Y39A3B.3 1 187-209
Sequence
Target Sequence 
>C. ELEGANS:184691_AT
gtgacatcgaaaacaacgctccagtactcttcgactgagagaaaaagcttgaaaaatggt
ggtaatacgacagtgattttgtacgacaacttcaaatatttgattttctcaaactataaa
attcaatttcagaaaaaaacttacaacaagacgccaggagcatcgcagttgaatgatctt
cgaaaacccgcaaaaaacgagagaagcgataaggctactatcgaagttactacagaagaa
gatactactatcgtagatattataactactacagtaattattattattataacaattact
attactaccacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACATCGAAAACAACGCTCCAGT 553 481 604 Antisense
CGAAAACAACGCTCCAGTACTCTTC 393 249 611 Antisense
GCTCCAGTACTCTTCGACTGAGAGA 106 299 621 Antisense
TGGTGGTAATACGACAGTGATTTTG 595 551 660 Antisense
CAGTGATTTTGTACGACAACTTCAA 326 207 674 Antisense
ACTTACAACAAGACGCCAGGAGCAT 709 101 742 Antisense
AGACGCCAGGAGCATCGCAGTTGAA 388 71 752 Antisense
GAGCATCGCAGTTGAATGATCTTCG 287 389 761 Antisense
CGAGAGAAGCGATAAGGCTACTATC 315 247 801 Antisense
AAGGCTACTATCGAAGTTACTACAG 183 161 814 Antisense
TAACAATTACTATTACTACCACGGT 644 637 893 Antisense
Sequence Source Affymetrix Proprietary Database