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[184690_at] 7TM chemoreceptor, srt family

Description T27C10.1 /REP_DB=WormBase Gene ID /WP=CE19603 /TR=Q9TZM0 /GB=AAC67409.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 04      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 59.9
(3)
A 		12.2
(-3)
A 		50.3
(1.8)
A 		53.5
(2.2)
A 		48
B 42.4
(-0.9)
P 		50.7
(0.1)
A 		24.9
(-3)
A 		75
(3)
P 		50
C 38.2
(-3)
A 		61.6
(0)
A 		51.1
(-1.3)
A 		84.8
(3)
A 		47
avr 46.8
(-1.9) 		41.5
(-3) 		42.1
(-2.9) 		71.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 22.7
(-3)
A 		48.6
(0.4)
A 		68.8
(3)
P 		30.4
(-2)
A 		60.5
(1.9)
A 		58.2
(1.6)
A 		46
B 61.5
(3)
A 		55.5
(1.7)
A 		39.7
(-1.7)
M 		38.4
(-2)
A 		60.1
(2.7)
A 		33.5
(-3)
A 		28
C 24.6
(-1.5)
A 		56.5
(3)
A 		56.8
(3)
A 		35.9
(0.1)
A 		14
(-3)
A 		37.9
(0.4)
A 		43
avr 36.3
(-2.6) 		53.5
(2.5) 		55.1
(3) 		34.9
(-3) 		44.9
(-0) 		43.2
(-0.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.8
(3)
A 		2.7
(-3)
A 		13.1
(0.3)
A 		7.8
(-1.4)
A 		19
B 13.5
(1.5)
P 		12.5
(0.9)
A 		5.8
(-3)
A 		16
(3)
P 		10
C 12.6
(-3)
A 		17.7
(2.9)
A 		17.8
(3)
A 		14.3
(-1)
A 		5
avr 16
(3) 		11
(-3) 		12.2
(-1.6) 		12.7
(-1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.2
(-3)
A 		17.3
(2.6)
A 		15
(1.6)
P 		7.7
(-1.5)
A 		18.3
(3)
A 		14.2
(1.3)
A 		14
B 21.4
(1.8)
A 		18.5
(0.6)
A 		9.7
(-3)
M 		10.2
(-2.8)
A 		24.4
(3)
A 		12.5
(-1.9)
A 		15
C 9.1
(-0.8)
A 		17.2
(3)
A 		14.5
(1.7)
A 		7.2
(-1.7)
A 		4.5
(-3)
A 		12.7
(0.9)
A 		13
avr 11.6
(-0.9) 		17.7
(3) 		13.1
(0) 		8.4
(-3) 		15.7
(1.7) 		13.1
(0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1660
Sequence Type Exemplar sequence
Representative Public ID T27C10.1 NCBI
Target Description T27C10.1 /REP_DB=WormBase Gene ID /WP=CE19603 /TR=Q9TZM0 /GB=AAC67409.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060441 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-61) (srt-61) mRNA, complete cds. 11/11 None
GENEFINDER00000038124 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10912495:10914168:1 9/11 None
SNAP00000038115 ENSEMBL cdna:SNAP chromosome:CEL140:I:10912744:10914168:1 9/11 None
T27C10.1 ENSEMBL cdna:known chromosome:CEL140:I:10912495:10914652:1 gene:T27C10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10912425-10914281(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-61
Ensembl T27C10.1
Entrez Gene 188990 Entrez gene
WormBase CE37994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_492842 Serpentine Receptor, class T family member (srt-61) [Caenorhabditis elegans] 0.0
blast T33479 hypothetical protein T27C10.1 - Caenorhabditis elegans 1.0E-157
blast CAE63868 Hypothetical protein CBG08433 [Caenorhabditis briggsae] 1.0E-150
blast NP_492842 Serpentine Receptor, class T family member (srt-61) [Caenorhabditis elegans] 1.0E-135
blast T33479 hypothetical protein T27C10.1 - Caenorhabditis elegans 1.0E-135
blast CAE63868 Hypothetical protein CBG08433 [Caenorhabditis briggsae] 1.0E-122
blast NP_492842 Serpentine Receptor, class T family member (srt-61) [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492842.2 7 39-61,78-100,115-137,157-179,205-224,245-267,277-299
T27C10.1 7 39-61,78-100,115-137,157-179,205-224,245-267,277-299
GENEFINDER00000038124 6 39-61,78-100,115-137,157-179,205-224,245-264
SNAP00000038115 6 5-24,37-59,74-96,117-139,165-184,205-224
Sequence
Target Sequence 
>C. ELEGANS:184690_AT
gtgtaattgcgacgccttgctacgttgcctacgcggttcttaccatatttttatcattta
atcgacttattcagttatcctctccgtcactggacaaggtgttctttggaggagaccggt
ggatgatctggataggaatggcttcatttttctggatcttctttatgcttgccctagctt
caccttgggcaacaattcgatatatccctgattggtattcatgggattatgactatgaac
tttcgggctcattttatgtccagaaagttgaaatgtatattgaagtcggtggaatctttg
tatctgcattcttctatttattgattatttatcgattggtgaaaacgaaaaagcgatttt
taatatcgaaaagttacaatgcggagatcaaagtcttgattcaggctacagtaatcacgg
tttattgtactgtgctcaatgtgctatggcataattattcatggatgctcccccagaacc
tttggagctacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTAATTGCGACGCCTTGCTACGT 643 485 353 Antisense
GCGGTTCTTACCATATTTTTATCAT 230 291 385 Antisense
ATCGACTTATTCAGTTATCCTCTCC 392 37 413 Antisense
GGAGGAGACCGGTGGATGATCTGGA 124 515 460 Antisense
ATGGCTTCATTTTTCTGGATCTTCT 400 53 490 Antisense
GCCCTAGCTTCACCTTGGGCAACAA 526 285 523 Antisense
GAACTTTCGGGCTCATTTTATGTCC 231 349 589 Antisense
TCGGTGGAATCTTTGTATCTGCATT 134 607 638 Antisense
GTATCTGCATTCTTCTATTTATTGA 231 455 652 Antisense
TAATTATTCATGGATGCTCCCCCAG 651 631 804 Antisense
TCCCCCAGAACCTTTGGAGCTACAC 463 595 821 Antisense
Sequence Source Affymetrix Proprietary Database