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[184689_at]

Description F48G7.12 /REP_DB=WormBase Gene ID /WP=CE10776 /TR=O44594 /GB=AAG24128.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 37.6
(-1.6)
A 		15.5
(-3)
A 		24.8
(-2.4)
A 		109.7
(3)
P 		94
B 24.5
(-2.5)
A 		34.6
(-0.7)
A 		21.9
(-3)
A 		55
(3)
A 		33
C 30.7
(-1.9)
A 		3.9
(-3)
A 		3
(-3)
A 		156.9
(3)
P 		154
avr 30.9
(-2.1) 		18
(-2.9) 		16.6
(-3) 		107.2
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 62.8
(0.9)
A 		18.3
(-2.5)
A 		89.1
(3)
P 		12.2
(-3)
A 		68
(1.4)
A 		20.8
(-2.3)
A 		77
B 21.2
(-0.8)
A 		15
(-3)
A 		31.7
(3)
A 		28.4
(1.8)
A 		27.3
(1.4)
P 		31.4
(2.9)
A 		17
C 26.2
(-0.9)
A 		67.7
(3)
P 		7.3
(-2.7)
A 		4.5
(-3)
A 		5.6
(-2.9)
A 		22.1
(-1.3)
A 		63
avr 36.7
(1.7) 		33.7
(1.1) 		42.7
(3) 		15
(-3) 		33.6
(1) 		24.8
(-0.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 13.7
(1.9)
A 		3.4
(-3)
A 		6.5
(-1.5)
A 		16.1
(3)
P 		13
B 7.8
(-0.5)
A 		8.5
(0.1)
A 		5.1
(-3)
A 		11.7
(3)
A 		7
C 10.2
(-0.8)
A 		1.1
(-3)
A 		1
(-3)
A 		26.5
(3)
P 		26
avr 10.6
(-0.2) 		4.3
(-3) 		4.2
(-3) 		18.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.6
(-0.1)
A 		6.5
(-1.8)
A 		19.4
(2.6)
P 		3.1
(-3)
A 		20.5
(3)
A 		5.1
(-2.3)
A 		17
B 7.4
(-0.9)
A 		5
(-3)
A 		7.7
(-0.6)
A 		7.5
(-0.8)
A 		11.1
(2.5)
P 		11.7
(3)
A 		7
C 9.7
(-0.3)
A 		20.7
(3)
P 		1.9
(-2.7)
A 		0.9
(-3)
A 		1.8
(-2.7)
A 		7.4
(-1)
A 		20
avr 9.6
(1.8) 		10.7
(2.7) 		9.7
(1.8) 		3.8
(-3) 		11.1
(3) 		8.1
(0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15124
Sequence Type Exemplar sequence
Representative Public ID F48G7.12 NCBI
Target Description F48G7.12 /REP_DB=WormBase Gene ID /WP=CE10776 /TR=O44594 /GB=AAG24128.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070876 NCBI Caenorhabditis elegans F48G7.12 (F48G7.12) mRNA, complete cds. 11/11 None
F48G7.12 ENSEMBL cdna:known chromosome:CEL140:V:643591:646028:-1 gene:F48G7.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012358 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012372 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:643590-646028(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.12
Entrez Gene 186000 Entrez gene
SwissProt O44594 EMBL-EBI
WormBase CE35319 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24128 Hypothetical protein F48G7.12 [Caenorhabditis elegans] ref|NP_503277.2| F48G7.12 [Caenorhabditis elegans] 0.0
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 0.0
blast CAE64714 Hypothetical protein CBG09500 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184689_AT
gaagggcttctacgaacagacgcgtgaaatcaatcgaaaacgactgacagagaaaacaaa
tgtagttgaagcattcgggcaggaagttgtcaactttgaactggcgtgcaatttgaataa
atacattggaattaaacgagacgtcatggtacatggtgacttgtgggcagccaatatttt
gtggaaagaaaaagatgaaggaacgttttcagtcagcaaagtcattgactatcagctcat
tcacatgggaaatccagctgaagatctagttcgactcttcctctccacactttctggagc
agatagacaagctcactgggagagactacttgaaaagttttatacatattttcttgcagc
ccttggagatgatgaagcaccatactcactcgagcagttgaaagagtgttaccgttgttt
cttcgtatctggcggacttgtcatgatgccaatgtacggtcctttcgctcaggctaaact
gtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGGCTTCTACGAACAGACGCGT 574 335 720 Antisense
GAAGCATTCGGGCAGGAAGTTGTCA 691 337 787 Antisense
GTCAACTTTGAACTGGCGTGCAATT 190 465 808 Antisense
TCATGGTACATGGTGACTTGTGGGC 269 623 863 Antisense
GAAGATCTAGTTCGACTCTTCCTCT 406 337 979 Antisense
TACATATTTTCTTGCAGCCCTTGGA 186 645 1062 Antisense
GATGATGAAGCACCATACTCACTCG 232 411 1087 Antisense
GCACCATACTCACTCGAGCAGTTGA 296 315 1096 Antisense
TGTTACCGTTGTTTCTTCGTATCTG 649 561 1126 Antisense
TTCGTATCTGGCGGACTTGTCATGA 373 695 1141 Antisense
GTCCTTTCGCTCAGGCTAAACTGTC 415 475 1178 Antisense
Sequence Source Affymetrix Proprietary Database