[Home] | [Total List]

[184687_at] 7TM chemoreceptor, srx family

Description E02C12.3 /REP_DB=WormBase Gene ID /WP=CE04312 /TR=Q19026 /GB=AAA83459.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 19      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 12.5
(-3)
A 		52.9
(0)
A 		18.8
(-2.5)
A 		92
(3)
M 		80
B 41.7
(3)
A 		23.6
(0.1)
A 		4.5
(-3)
A 		23
(-0)
A 		37
C 12.2
(-3)
A 		16.1
(-2.7)
A 		19.6
(-2.3)
A 		79.6
(3)
P 		67
avr 22.1
(-2.1) 		30.9
(-1) 		14.3
(-3) 		64.9
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 10.1
(-1.4)
A 		5.8
(-2.3)
A 		30.9
(3)
A 		7.1
(-2)
A 		22.9
(1.3)
A 		2.6
(-3)
A 		28
B 24.5
(0.6)
A 		40.2
(3)
A 		37.6
(2.6)
A 		22
(0.2)
A 		15.5
(-0.8)
A 		1.5
(-3)
A 		39
C 15.4
(-2.6)
A 		66.9
(3)
A 		11.4
(-3)
A 		42.1
(0.3)
A 		13.1
(-2.8)
A 		15.4
(-2.6)
A 		56
avr 16.7
(-1) 		37.6
(3) 		26.6
(0.9) 		23.7
(0.3) 		17.2
(-0.9) 		6.5
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.5
(-3)
A 		11.5
(1.7)
A 		4.9
(-2.7)
A 		13.5
(3)
M 		9
B 13.3
(3)
A 		5.8
(-0.7)
A 		1.1
(-3)
A 		4.9
(-1.1)
A 		12
C 4.1
(-3)
A 		4.6
(-2.7)
A 		6.8
(-1.3)
A 		13.4
(3)
P 		9
avr 7.3
(-0.1) 		7.3
(-0.1) 		4.3
(-3) 		10.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.9
(-1.8)
A 		2.1
(-1.6)
A 		6.7
(2.8)
A 		1.8
(-1.9)
A 		6.9
(3)
A 		0.6
(-3)
A 		6
B 8.5
(0.7)
A 		13.4
(3)
A 		9.1
(1)
A 		5.8
(-0.6)
A 		6.3
(-0.3)
A 		0.6
(-3)
A 		13
C 5.7
(-2)
A 		20.4
(3)
A 		2.9
(-3)
A 		8.5
(-1.1)
A 		4.2
(-2.6)
A 		5.2
(-2.2)
A 		18
avr 5.4
(-1) 		12
(3) 		6.2
(-0.5) 		5.4
(-1) 		5.8
(-0.8) 		2.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11818
Sequence Type Exemplar sequence
Representative Public ID E02C12.3 NCBI
Target Description E02C12.3 /REP_DB=WormBase Gene ID /WP=CE04312 /TR=Q19026 /GB=AAA83459.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073021 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-47) (srx-47) mRNA, complete cds. 11/11 None
SNAP00000032000 ENSEMBL cdna:SNAP chromosome:CEL140:V:9352571:9353916:1 10/11 None
GENEFINDER00000032018 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9352571:9357081:1 10/11 None
E02C12.3 ENSEMBL cdna:known chromosome:CEL140:V:9352571:9353916:1 gene:E02C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9352570-9353916(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-47
Ensembl E02C12.3
Entrez Gene 183985 Entrez gene
SwissProt Q19026 EMBL-EBI
WormBase CE04312 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83460 Serpentine receptor, class x protein 46 [Caenorhabditis elegans] ref|NP_505423.1| Serpentine Receptor, class X family member (srx-46) [Caenorhabditis elegans] 1.0E-158
blast AAA83459 Serpentine receptor, class x protein 47 [Caenorhabditis elegans] ref|NP_505422.1| Serpentine Receptor, class X family member (srx-47) [Caenorhabditis elegans] 1.0E-157
blast AAA83459 Serpentine receptor, class x protein 47 [Caenorhabditis elegans] ref|NP_505422.1| Serpentine Receptor, class X family member (srx-47) [Caenorhabditis elegans] 1.0E-141
blast CAE72161 Hypothetical protein CBG19261 [Caenorhabditis briggsae] 1.0E-115
blast AAA83459 Serpentine receptor, class x protein 47 [Caenorhabditis elegans] ref|NP_505422.1| Serpentine Receptor, class X family member (srx-47) [Caenorhabditis elegans] 1.0E-100
blast AAA83460 Serpentine receptor, class x protein 46 [Caenorhabditis elegans] ref|NP_505423.1| Serpentine Receptor, class X family member (srx-46) [Caenorhabditis elegans] 3.0E-87
blast CAE72161 Hypothetical protein CBG19261 [Caenorhabditis briggsae] 9.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505422.1 7 5-27,48-67,77-99,120-142,162-184,215-237,247-269
E02C12.3 7 5-27,48-67,77-99,120-142,162-184,215-237,247-269
SNAP00000032000 6 5-27,47-69,76-98,121-143,164-181,191-213
GENEFINDER00000032018 11 5-27,48-67,77-99,120-142,162-184,213-235,245-267,421-443,463-485,511-533,543-565
Sequence
Target Sequence 
>C. ELEGANS:184687_AT
tcccaccttcttttggcttgtaatcggttatgtgcagtgactaatccgctaaaatatcaa
caattgtacagccagcggttcacaattggaatgctcttcacagcgaatatgtatgcattt
gcgtcaattattgttctctacacaagtggatgtagatacttttggagcagtgaactacat
atgtttatgtatcatgtatccaattcatgtgtaaacttttcattttacggaatattctgt
aaatatcttacaataattattcttatcttgctaattgacttattcagtatttataaagca
agattatttttgcaaaaaacacaacaagatcggattagtcatcaagttaacacaaaggaa
gttgggctgctggttcagacatgtctgcaaggtcttttgtttaccgtggaactaatatgt
tatttcattatctcaccgcatgtagaaaataaatgggctcaattctttctcacaactttt
gcatttttgaccattcatacttgtgatggaacaataagcattttttgcaatggagacttt
agaaagtatattttcaagaactcgttcaccaaattatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCACCTTCTTTTGGCTTGTAATC 694 597 289 Antisense
GGTTATGTGCAGTGACTAATCCGCT 330 505 314 Antisense
ACAATTGTACAGCCAGCGGTTCACA 274 113 348 Antisense
GCGGTTCACAATTGGAATGCTCTTC 237 293 363 Antisense
TTGCGTCAATTATTGTTCTCTACAC 170 701 407 Antisense
GGGCTGCTGGTTCAGACATGTCTGC 140 493 652 Antisense
GTCTGCAAGGTCTTTTGTTTACCGT 504 469 671 Antisense
GTTATTTCATTATCTCACCGCATGT 691 447 707 Antisense
TAAATGGGCTCAATTCTTTCTCACA 623 641 738 Antisense
AATTCTTTCTCACAACTTTTGCATT 641 175 749 Antisense
AAGAACTCGTTCACCAAATTATCTG 141 153 844 Antisense
Sequence Source Affymetrix Proprietary Database