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[184685_s_at]

Description T08B2.12 /REP_DB=WormBase Gene ID /WP=CE13441 /TR=Q9GYS3 /GB=AAG00019.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 16.2
(-3)
A 		121.6
(-1.4)
A 		109.9
(-1.6)
A 		408.8
(3)
M 		393
B 67
(-3)
A 		151.6
(3)
A 		115.6
(0.4)
A 		146.3
(2.6)
A 		85
C 59.3
(-3)
A 		153.8
(1)
A 		66.2
(-2.7)
A 		200.4
(3)
P 		141
avr 47.5
(-3) 		142.3
(-0.2) 		97.2
(-1.5) 		251.8
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2168
1 2 3 4 5 6 range
A 33.4
(-3)
A 		113.4
(-2.8)
A 		93
(-2.8)
A 		126.8
(-2.7)
P 		1206.9
(0.3)
P 		2183.8
(3)
P 		2150
B 73.7
(-2.8)
A 		16.3
(-3)
A 		20.5
(-3)
A 		172.2
(-2.5)
P 		1287.9
(1.2)
P 		1821
(3)
P 		1805
C 75.7
(-3)
A 		82.6
(-3)
A 		99.3
(-2.9)
A 		180.8
(-2.7)
P 		1246.9
(0.6)
P 		2026.7
(3)
P 		1951
avr 60.9
(-3) 		70.8
(-3) 		70.9
(-3) 		159.9
(-2.7) 		1247.2
(0.7) 		2010.5
(3) 		1950
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 5.9
(-3)
A 		26.4
(-0.7)
A 		28.7
(-0.5)
A 		59.8
(3)
M 		54
B 21.4
(-3)
A 		37.4
(3)
A 		26.8
(-1)
A 		31.2
(0.7)
A 		16
C 19.6
(-3)
A 		44.2
(3)
A 		23.1
(-2.1)
A 		33.8
(0.5)
P 		25
avr 15.6
(-3) 		36
(1.7) 		26.2
(-0.6) 		41.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 674
1 2 3 4 5 6 range
A 6.2
(-3)
A 		40.3
(-2.6)
A 		20.2
(-2.8)
A 		32.2
(-2.7)
P 		364.2
(1.1)
P 		531.7
(3)
P 		526
B 25.6
(-2.8)
A 		5.4
(-3)
A 		5
(-3)
A 		45.6
(-2.6)
P 		523.2
(1.6)
P 		679
(3)
P 		674
C 28.1
(-3)
A 		25.2
(-3)
A 		25.3
(-3)
A 		36.3
(-2.9)
P 		403.5
(0.5)
P 		678.5
(3)
P 		653
avr 20
(-3) 		23.6
(-2.9) 		16.8
(-3) 		38
(-2.8) 		430.3
(1) 		629.7
(3) 		613
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184685_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.458
Sequence Type Exemplar sequence
Representative Public ID T08B2.12 NCBI
Target Description T08B2.12 /REP_DB=WormBase Gene ID /WP=CE13441 /TR=Q9GYS3 /GB=AAG00019.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059398(11), NM_059400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059398 NCBI Caenorhabditis elegans T08B2.12 (T08B2.12) mRNA, complete cds. 11/11 None
NM_059400 NCBI Caenorhabditis elegans C48E7.7 (C48E7.7) mRNA, complete cds. 11/11 None
SNAP00000035008 ENSEMBL cdna:SNAP chromosome:CEL140:I:6239684:6240187:-1 11/11 None
GENEFINDER00000035015 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6239684:6240187:-1 11/11 None
SNAP00000002337 ENSEMBL cdna:SNAP chromosome:CEL140:I:6242920:6243423:1 11/11 None
GENEFINDER00000002356 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6242920:6243423:1 11/11 None
T08B2.12 ENSEMBL cdna:known chromosome:CEL140:I:6239684:6240187:-1 gene:T08B2.12 11/11 None
C48E7.7 ENSEMBL cdna:known chromosome:CEL140:I:6242920:6243423:1 gene:C48E7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059426 2/11 Cross Hyb Matching Probes A 
SNAP00000041719 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041725 2/11 Cross Hyb Matching Probes None
F26B1.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6242848-6243352(+) 99.78 99.78
chrI:6337665-6338190(+) 88.89 94.99
chrI:6239612-6240116(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T08B2.12
C48E7.7
Entrez Gene 172315 Entrez gene
172316 Entrez gene
SwissProt Q8IG73 EMBL-EBI
Q9GYS3 EMBL-EBI
WormBase CE08822 Wormbase
CE13441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491799 T08B2.12 [Caenorhabditis elegans] gb|AAG00019.1| Hypothetical protein T08B2.12 [Caenorhabditis elegans] 2.0E-49
blast AAN60528 Hypothetical protein C48E7.7 [Caenorhabditis elegans] ref|NP_491801.1| C48E7.7 [Caenorhabditis elegans] 2.0E-49
blast AAN60528 Hypothetical protein C48E7.7 [Caenorhabditis elegans] ref|NP_491801.1| C48E7.7 [Caenorhabditis elegans] 3.0E-49
blast NP_491799 T08B2.12 [Caenorhabditis elegans] gb|AAG00019.1| Hypothetical protein T08B2.12 [Caenorhabditis elegans] 3.0E-49
Sequence
Target Sequence 
>C. ELEGANS:184685_S_AT
aatcaacatcttgttcgccatgctcctcatcttggctccaattgtcaatggagacgatac
tgccgttgctgtgactgcaactaaagtcactgaagatgcaactgtggctctcatcgaaac
aacagccaaagccgttgcagaaacagaaccagctacagaaccagttcaaaccaccgaagc
tgttgaagaaactacagaagctgttgttgtagaagccactcaagagactaaagatgctga
aaccaatgctccagttgatactccagctgccaataacatcgaagctacaactgaaggggc
ttctcgtccatcgctttcatcgactgttgcaccaaatgtaacttctgttgatgacttgct
cg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAACATCTTGTTCGCCATGCTC 481 171 21 Antisense
ATGGAGACGATACTGCCGTTGCTGT 686 51 68 Antisense
ACTGCCGTTGCTGTGACTGCAACTA 406 99 79 Antisense
AACTGTGGCTCTCATCGAAACAACA 141 143 120 Antisense
AACAGCCAAAGCCGTTGCAGAAACA 139 135 141 Antisense
AAGATGCTGAAACCAATGCTCCAGT 77 155 251 Antisense
GTTGATACTCCAGCTGCCAATAACA 189 439 274 Antisense
CTGCCAATAACATCGAAGCTACAAC 167 237 287 Antisense
ACAACTGAAGGGGCTTCTCGTCCAT 316 113 307 Antisense
GACTGTTGCACCAAATGTAACTTCT 609 375 342 Antisense
GTAACTTCTGTTGATGACTTGCTCG 681 461 358 Antisense
Sequence Source Affymetrix Proprietary Database