[Home] | [Total List]

[184684_at]

Description Y53F4B.27 /REP_DB=WormBase Gene ID /WP=CE26159 /TR=Q9NA93 /GB=CAB61101.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 71      6grp_total > 10      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1062
1 2 3 4 range
A 9.2
(-3)
A 		1071.3
(3)
P 		830.2
(1.6)
P 		149.8
(-2.2)
A 		1062
B 15.7
(-3)
A 		1045.1
(3)
P 		901.4
(2.2)
P 		65.7
(-2.7)
A 		1029
C 51.7
(-3)
A 		1010.5
(3)
P 		944.5
(2.6)
P 		93.6
(-2.7)
P 		959
avr 25.5
(-3) 		1042.3
(3) 		892
(2.1) 		103
(-2.5) 		1017

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 104.6
(-3)
P 		599.5
(3)
P 		403.1
(0.6)
P 		355.3
(0)
P 		279.7
(-0.9)
P 		149.9
(-2.5)
P 		495
B 114.3
(-3)
P 		618.6
(3)
P 		356.4
(-0.1)
P 		279.5
(-1)
P 		266.6
(-1.2)
P 		205.3
(-1.9)
P 		504
C 75.6
(-3)
P 		610.9
(3)
P 		422.1
(0.9)
P 		354.5
(0.1)
P 		282.4
(-0.7)
P 		157.5
(-2.1)
P 		535
avr 98.2
(-3) 		609.7
(3) 		393.9
(0.5) 		329.8
(-0.3) 		276.2
(-0.9) 		170.9
(-2.1) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 3.3
(-3)
A 		232.6
(3)
P 		217
(2.6)
P 		21.9
(-2.5)
A 		229
B 5
(-3)
A 		258.1
(3)
P 		208.9
(1.8)
P 		14
(-2.8)
A 		253
C 17.1
(-3)
A 		290.5
(2.3)
P 		329.2
(3)
P 		15.8
(-3)
P 		313
avr 8.5
(-3) 		260.4
(3) 		251.7
(2.8) 		17.2
(-2.8) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 19.3
(-3)
P 		213.2
(3)
P 		87.8
(-0.9)
P 		90.1
(-0.8)
P 		84.4
(-1)
P 		36.5
(-2.5)
P 		194
B 39.8
(-3)
P 		205.9
(3)
P 		86.6
(-1.3)
P 		74
(-1.8)
P 		108.3
(-0.5)
P 		76.6
(-1.7)
P 		166
C 28
(-3)
P 		186.4
(3)
P 		107.4
(0)
P 		71.3
(-1.4)
P 		91.4
(-0.6)
P 		52.7
(-2.1)
P 		158
avr 29
(-3) 		201.8
(3) 		93.9
(-0.7) 		78.5
(-1.3) 		94.7
(-0.7) 		55.3
(-2.1) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3925
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.27 NCBI
Target Description Y53F4B.27 /REP_DB=WormBase Gene ID /WP=CE26159 /TR=Q9NA93 /GB=CAB61101.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027296(11), NM_001027297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027296 NCBI Caenorhabditis elegans Y53F4B.27a (Y53F4B.27) mRNA, complete cds. 11/11 None
NM_001027297 NCBI Caenorhabditis elegans Y53F4B.27b (Y53F4B.27) mRNA, complete cds. 11/11 None
SNAP00000043064 ENSEMBL cdna:SNAP chromosome:CEL140:II:15141613:15151733:1 10/11 None
GENEFINDER00000043150 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15141227:15151733:1 11/11 None
Y53F4B.27.2 ENSEMBL cdna:known chromosome:CEL140:II:15145648:15151807:1 gene:Y53F4B.27 11/11 None
Y53F4B.27.1 ENSEMBL cdna:known chromosome:CEL140:II:15145867:15151807:1 gene:Y53F4B.27 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15145882-15151730(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53F4B.27
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61101 Hypothetical protein Y53F4B.27a [Caenorhabditis elegans] ref|NP_001022467.1| Y53F4B.27a [Caenorhabditis elegans] 0.0
blast CAE59728 Hypothetical protein CBG03164 [Caenorhabditis briggsae] 0.0
blast CAI70419 Hypothetical protein Y53F4B.27b [Caenorhabditis elegans] ref|NP_001022468.1| Y53F4B.27b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 6.5E-13
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 3.5E-16
Sequence
Target Sequence 
>C. ELEGANS:184684_AT
tcgatcctaatgggctacctattcataaaaagctgaaaccagtggagcatctaccgattc
gtccgatttccacggaaagtatcgtaaaattcattcaaaaggggaagccaatgcaagttc
aggcacaaaatggagtgttcagtttgccttctcagcagcatcagccaatccctatgggaa
tcccatccacctgttcgactccaggaggctgtctctttgaaaaagatttctgcggatgga
ctacaccgccagttcacatgtcgagcttctccgaggcaattgttccggttggagagattg
cggtaatggagactgaaacgaagatgactcaggctcatacggtaatctttgacgcgttgg
aattcgcctcaggcacccgccttattgcctgttgcctagccaatggacagctcacctgcc
cgttctcaactcctcatgagcaaacaggcattctttggcagttctcgaagtttgagtgcc
cgattaatacgtcgaagatcgcttttatctgcgagaactttggcctagctgaaagtatat
gtgcagttgacaatatccgaattcatacttcaaccgatgtattcttcctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATCCTAATGGGCTACCTATTCA 135 603 1082 Antisense
ACCAGTGGAGCATCTACCGATTCGT 390 85 1119 Antisense
TACCGATTCGTCCGATTTCCACGGA 121 649 1133 Antisense
TGGAGTGTTCAGTTTGCCTTCTCAG 695 549 1212 Antisense
CAGCATCAGCCAATCCCTATGGGAA 177 205 1237 Antisense
GAGCTTCTCCGAGGCAATTGTTCCG 345 387 1344 Antisense
TGACGCGTTGGAATTCGCCTCAGGC 608 567 1431 Antisense
GTTGCCTAGCCAATGGACAGCTCAC 437 439 1472 Antisense
AACAGGCATTCTTTGGCAGTTCTCG 151 137 1524 Antisense
ATCTGCGAGAACTTTGGCCTAGCTG 536 33 1588 Antisense
ACTTCAACCGATGTATTCTTCCTGG 74 103 1648 Antisense
Sequence Source Affymetrix Proprietary Database