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[184683_at]

Description F46G11.1 /REP_DB=WormBase Gene ID /WP=CE04584 /TR=Q20485 /GB=AAA81397.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 43      6grp_highest_nonorm > 70      6grp_total > 03      4grp_total > 52      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 448.6
(2)
P 		514.1
(3)
P 		359.5
(0.7)
P 		102.5
(-3)
A 		412
B 474.7
(3)
P 		435.8
(2.2)
P 		390
(1.3)
P 		170.5
(-3)
P 		304
C 474
(1.9)
P 		542.4
(3)
P 		375.5
(0.4)
P 		156.7
(-3)
M 		386
avr 465.8
(2.5) 		497.4
(3) 		375
(0.9) 		143.2
(-3) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 290.7
(1.6)
P 		311.7
(2.2)
P 		236.7
(-0)
P 		261.6
(0.7)
P 		338.4
(3)
P 		135.6
(-3)
P 		203
B 305.8
(1.8)
P 		326
(3)
P 		269.4
(-0.3)
P 		223.1
(-3)
P 		285.6
(0.6)
P 		244.2
(-1.8)
P 		103
C 432.6
(3)
P 		268
(-0.8)
P 		175.5
(-3)
P 		374.8
(1.7)
P 		324.7
(0.5)
P 		206.7
(-2.3)
P 		257
avr 343
(3) 		301.9
(1.3) 		227.2
(-1.7) 		286.5
(0.7) 		316.2
(1.9) 		195.5
(-3) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 163.3
(3)
P 		111.6
(0.9)
P 		94
(0.2)
P 		15
(-3)
A 		148
B 151.4
(3)
P 		107.6
(0.7)
P 		90.4
(-0.2)
P 		36.3
(-3)
P 		115
C 156.9
(3)
P 		155.9
(3)
P 		130.9
(1.8)
P 		26.4
(-3)
M 		131
avr 157.2
(3) 		125
(1.5) 		105.1
(0.6) 		25.9
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 53.6
(-1.4)
P 		110.8
(3)
P 		51.5
(-1.6)
P 		66.3
(-0.4)
P 		102.1
(2.3)
P 		33
(-3)
P 		78
B 106.4
(2)
P 		108.5
(2.2)
P 		65.4
(-2.3)
P 		59.1
(-3)
P 		116
(3)
P 		91.1
(0.4)
P 		57
C 160.4
(3)
P 		81.8
(-1.1)
P 		44.7
(-3)
P 		75.4
(-1.4)
P 		105.1
(0.1)
P 		69.2
(-1.7)
P 		116
avr 106.8
(2.9) 		100.4
(2.2) 		53.9
(-3) 		66.9
(-1.6) 		107.7
(3) 		64.4
(-1.8) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17195
Sequence Type Exemplar sequence
Representative Public ID F46G11.1 NCBI
Target Description F46G11.1 /REP_DB=WormBase Gene ID /WP=CE04584 /TR=Q20485 /GB=AAA81397.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076572 NCBI Caenorhabditis elegans F46G11.1 (F46G11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000029328 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5788121:5797015:1 11/11 None
SNAP00000029325 ENSEMBL cdna:SNAP chromosome:CEL140:X:5792645:5797015:1 11/11 None
F46G11.1 ENSEMBL cdna:known chromosome:CEL140:X:5791661:5797138:1 gene:F46G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5793993-5797138(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46G11.1
Entrez Gene 180845 Entrez gene
SwissProt Q5WRT0 EMBL-EBI
WormBase CE37646 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.15312.1.S1_AT similar to twinkle cfa
DROSOPHILA_2:1634428_AT dm
DROSGENOME1:146109_AT dm
CHICKEN:GGAAFFX.11288.1.S1_S_AT progressive external ophthalmoplegia 1 gga
CHICKEN:GGAAFFX.12776.1.S1_AT progressive external ophthalmoplegia 1 gga
HG-U133_PLUS_2:218590_AT progressive external ophthalmoplegia 1 hs
HG-U133A:218590_AT progressive external ophthalmoplegia 1 hs
HG-U133A_2:218590_AT progressive external ophthalmoplegia 1 hs
HU35KSUBB:RC_F10278_AT progressive external ophthalmoplegia 1 hs
U133_X3P:G11141908_3P_AT progressive external ophthalmoplegia 1 hs
HG-U95B:43019_AT progressive external ophthalmoplegia 1 hs
MG-U74BV2:115090_AT progressive external ophthalmoplegia 1 (human) mm
MOE430B:1434168_AT progressive external ophthalmoplegia 1 (human) mm
MOUSE430_2:1434168_AT progressive external ophthalmoplegia 1 (human) mm
RG-U34B:RC_AA925995_AT progressive external ophthalmoplegia 1 (predicted) rn
RAE230B:1398472_AT progressive external ophthalmoplegia 1 (predicted) rn
RAT230_2:1398472_AT progressive external ophthalmoplegia 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAV28342 Hypothetical protein F46G11.1 [Caenorhabditis elegans] ref|NP_508973.2| F46G11.1 [Caenorhabditis elegans] 0.0
blast T16375 hypothetical protein F46G11.1 - Caenorhabditis elegans 0.0
blast CAE68801 Hypothetical protein CBG14751 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508973.2 1 596-615
F46G11.1 1 596-615
Sequence
Target Sequence 
>C. ELEGANS:184683_AT
gttcggcgttgacaatgcttgactccgaagagttcatggagaagtccataaatgaaatag
caattcgtattcacgttgaaaacagtggtatccaacatgttgtcatcgataatctccagt
ttttgattaaccaaggaatgatggcagatgagaagtcaagtggccttgatagattccacc
ttcaggatcgatttgtcggatacatgcgtcaacttgctactcagaatcaaattcacatca
ctatggttgttcatcccagaaaaactgacggtgatactgaaattgatgtgcaacactttg
gaggttccgccagagtcacccaggaagctgataatgtcattgctattcagcggaagcgtg
atgatcgtgaccgttccaagttccgaaaattcttatacattctgaaaaaccgctactatg
gccgacgagtggagagcgatcaacttgagatggttttcaacccatccacctattctcata
cagttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGGCGTTGACAATGCTTGACTC 146 443 1142 Antisense
GATAGATTCCACCTTCAGGATCGAT 246 425 1309 Antisense
GATACATGCGTCAACTTGCTACTCA 595 423 1340 Antisense
ACATCACTATGGTTGTTCATCCCAG 516 105 1376 Antisense
GTGCAACACTTTGGAGGTTCCGCCA 483 481 1429 Antisense
CGCCAGAGTCACCCAGGAAGCTGAT 680 255 1449 Antisense
GAAGCGTGATGATCGTGACCGTTCC 381 343 1494 Antisense
TGAAAAACCGCTACTATGGCCGACG 237 573 1544 Antisense
GGCCGACGAGTGGAGAGCGATCAAC 258 543 1561 Antisense
GAGATGGTTTTCAACCCATCCACCT 698 393 1588 Antisense
CATCCACCTATTCTCATACAGTTGT 326 211 1604 Antisense
Sequence Source Affymetrix Proprietary Database