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[184682_s_at]

Description K09B11.10 /REP_DB=WormBase Gene ID /WP=CE23865 /TR=Q9U3B4 /GB=CAB05554.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 2.4
(-3)
A 		285.4
(1)
P 		424.1
(3)
P 		100.6
(-1.6)
A 		422
B 7
(-3)
A 		294.4
(1.5)
P 		392
(3)
P 		26
(-2.7)
A 		385
C 4.9
(-3)
A 		299.7
(2.1)
P 		350.2
(3)
P 		13.1
(-2.9)
A 		345
avr 4.8
(-3) 		293.2
(1.5) 		388.8
(3) 		46.6
(-2.3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 47.7
(-3)
A 		206.1
(1.5)
P 		188.9
(1)
P 		201.5
(1.4)
P 		258.1
(3)
P 		84.7
(-1.9)
A 		210
B 8.4
(-3)
A 		196.8
(1.2)
P 		167.5
(0.6)
P 		274.6
(3)
P 		160.9
(0.4)
P 		72.2
(-1.6)
P 		266
C 5.1
(-3)
A 		205
(1.2)
P 		129.3
(-0.4)
P 		292.5
(3)
P 		185.9
(0.8)
P 		100.9
(-1)
P 		287
avr 20.4
(-3) 		202.6
(1.6) 		161.9
(0.6) 		256.2
(3) 		201.6
(1.6) 		85.9
(-1.3) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 0.9
(-3)
A 		62
(0.3)
P 		110.9
(3)
P 		14.7
(-2.2)
A 		110
B 2.2
(-3)
A 		72.7
(1.8)
P 		90.8
(3)
P 		5.5
(-2.8)
A 		89
C 1.6
(-3)
A 		86.2
(1.2)
P 		122.1
(3)
P 		2.2
(-3)
A 		121
avr 1.6
(-3) 		73.6
(1.1) 		107.9
(3) 		7.5
(-2.7) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 8.8
(-3)
A 		73.3
(2.6)
P 		41.1
(-0.2)
P 		51.1
(0.7)
P 		77.9
(3)
P 		20.6
(-2)
A 		69
B 2.9
(-3)
A 		65.5
(2.4)
P 		40.7
(0.2)
P 		72.7
(3)
P 		65.4
(2.4)
P 		26.9
(-0.9)
P 		70
C 1.9
(-3)
A 		62.5
(3)
P 		32.9
(0.1)
P 		58.8
(2.6)
P 		60.2
(2.8)
P 		33.8
(0.2)
P 		61
avr 4.5
(-3) 		67.1
(2.9) 		38.2
(0.2) 		60.9
(2.3) 		67.8
(3) 		27.1
(-0.9) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184682_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9915
Sequence Type Exemplar sequence
Representative Public ID K09B11.10 NCBI
Target Description K09B11.10 /REP_DB=WormBase Gene ID /WP=CE23865 /TR=Q9U3B4 /GB=CAB05554.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070191 NCBI Caenorhabditis elegans K09B11.10 (K09B11.10) mRNA, complete cds. 11/11 None
SNAP00000037694 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13434269:13436401:-1 10/11 None
K09B11.10 ENSEMBL cdna:known chromosome:CEL140:IV:13434211:13445254:-1 gene:K09B11.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037695 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037708 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037713 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13434274-13445241(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09B11.10
Entrez Gene 266652 Entrez gene
SwissProt Q9U3B4 EMBL-EBI
WormBase CE35588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05554 Hypothetical protein K09B11.10 [Caenorhabditis elegans] ref|NP_502592.2| K09B11.10 [Caenorhabditis elegans] 0.0
blast CAE58599 Hypothetical protein CBG01766 [Caenorhabditis briggsae] 0.0
blast CAB05554 Hypothetical protein K09B11.10 [Caenorhabditis elegans] ref|NP_502592.2| K09B11.10 [Caenorhabditis elegans] 1.0E-120
blast CAE58599 Hypothetical protein CBG01766 [Caenorhabditis briggsae] 1.0E-64
blast CAE59953 Hypothetical protein CBG03441 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:184682_S_AT
gattcaaatgtgttcccagttcctaaaggagtcaaaggaaatgtggcagtgtttttaatg
caaaatgcaactgtgtcaaatttgagatcgagaatggttccatgctcatataatgggcga
attgatgtcgagtatatgagttacgagacaacagttgaaaaaccaggagatgttccagtg
atcaaaactccaaacggtgctacagtaaccctgaatggtggtggaatccgtgcaattctc
cgtagtccaacatttgatcttgcatatccttcgattctaacaattactctatcacaatct
acattcggttctcgtgtacttttatgtccagatgacacaagtgatccaacattatgtcat
gagttggctggcccaagagttctggattcttcggaaaagcaggtaatgttcccattggat
attggtgctcgttcattttctctcgtcctattacatgataaatcactggaattcggtcca
gcaacattcaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAAATGTGTTCCCAGTTCCTA 93 431 1360 Antisense
GATCAAAACTCCAAACGGTGCTACA 119 421 1539 Antisense
CAATTCTCCGTAGTCCAACATTTGA 137 179 1592 Antisense
TTGATCTTGCATATCCTTCGATTCT 655 705 1613 Antisense
ATCACAATCTACATTCGGTTCTCGT 584 27 1650 Antisense
GGTTCTCGTGTACTTTTATGTCCAG 445 507 1666 Antisense
ATTATGTCATGAGTTGGCTGGCCCA 26 13 1710 Antisense
GGCTGGCCCAAGAGTTCTGGATTCT 253 541 1725 Antisense
ATATTGGTGCTCGTTCATTTTCTCT 326 19 1778 Antisense
ATTTTCTCTCGTCCTATTACATGAT 345 15 1794 Antisense
AATTCGGTCCAGCAACATTCAACAT 316 177 1829 Antisense
Sequence Source Affymetrix Proprietary Database