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[184681_s_at]

Description M01A10.3 /REP_DB=WormBase Gene ID /WP=CE12232 /TR=P91390 /GB=AAB42275.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 46      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 57      6grp_total > 46      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3916
1 2 3 4 range
A 3620.8
(-2.1)
P 		6522.3
(3)
P 		4942
(0.2)
P 		3112.1
(-3)
P 		3410
B 4072.1
(0.2)
P 		5388.6
(3)
P 		5252.9
(2.7)
P 		2606.7
(-3)
P 		2782
C 3695.3
(-0.3)
P 		4957.3
(3)
P 		4900.8
(2.9)
P 		2665.3
(-3)
P 		2292
avr 3796.1
(-0.9) 		5622.7
(3) 		5031.9
(1.7) 		2794.7
(-3) 		2828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1401
1 2 3 4 5 6 range
A 3539.1
(3)
P 		2765.4
(-0.3)
P 		2630.9
(-0.9)
P 		2463.2
(-1.6)
P 		2137.8
(-3)
P 		2455.5
(-1.6)
P 		1401
B 2666.4
(2.1)
P 		2529.2
(0.3)
P 		2524.8
(0.2)
P 		2735.3
(3)
P 		2276.7
(-3)
P 		2584.6
(1)
P 		459
C 2463.5
(-0.7)
P 		2446.1
(-0.8)
P 		2824.7
(2.1)
P 		2355.2
(-1.5)
P 		2154.3
(-3)
P 		2947.8
(3)
P 		794
avr 2889.7
(3) 		2580.2
(0.3) 		2660.1
(1) 		2517.9
(-0.2) 		2189.6
(-3) 		2662.6
(1.1) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1259
1 2 3 4 range
A 1318.3
(2.4)
P 		1415.8
(3)
P 		1291.9
(2.2)
P 		455.5
(-3)
P 		960
B 1298.5
(2.7)
P 		1330.9
(3)
P 		1217.2
(2.1)
P 		555.5
(-3)
P 		775
C 1223.2
(0.7)
P 		1425.2
(1.7)
P 		1708.1
(3)
P 		449.4
(-3)
P 		1259
avr 1280
(2.2) 		1390.6
(2.9) 		1405.7
(3) 		486.8
(-3) 		919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 652.4
(-1.8)
P 		983.5
(3)
P 		573
(-3)
P 		624.7
(-2.2)
P 		645.1
(-1.9)
P 		597.8
(-2.6)
P 		411
B 927.8
(2.4)
P 		841.9
(0.9)
P 		613.1
(-3)
P 		724.5
(-1.1)
P 		925
(2.3)
P 		963.8
(3)
P 		351
C 913.1
(2.1)
P 		746.4
(0.2)
P 		718.9
(-0.1)
P 		473.6
(-3)
P 		697.1
(-0.4)
P 		986.8
(3)
P 		513
avr 831.1
(2.4) 		857.3
(3) 		635
(-2.3) 		607.6
(-3) 		755.7
(0.6) 		849.5
(2.8) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184681_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.742
Sequence Type Exemplar sequence
Representative Public ID M01A10.3 NCBI
Target Description M01A10.3 /REP_DB=WormBase Gene ID /WP=CE12232 /TR=P91390 /GB=AAB42275.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059223 NCBI Caenorhabditis elegans M01A10.3 (M01A10.3) mRNA, complete cds. 11/11 None
SNAP00000009741 ENSEMBL cdna:SNAP chromosome:CEL140:I:5549306:5550293:-1 11/11 None
GENEFINDER00000009751 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5549306:5550293:-1 11/11 None
M01A10.3 ENSEMBL cdna:known chromosome:CEL140:I:5549157:5550298:-1 gene:M01A10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5549305-5550293(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01A10.3
Entrez Gene 172208 Entrez gene
SwissProt P91390 EMBL-EBI
WormBase CE12232 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13460_AT ribophorin II (RPN2) family protein at
ATH1-121501:254456_AT ribophorin II (RPN2) family protein at
CANINE:1602586_X_AT similar to ribophorin II precursor cfa
CANINE:1598353_S_AT similar to ribophorin II precursor cfa
CANINE:1598352_AT similar to ribophorin II precursor cfa
CANINE:1585509_X_AT similar to ribophorin II precursor cfa
CANINE:1585508_S_AT similar to ribophorin II precursor cfa
CANINE:1585507_AT similar to ribophorin II precursor cfa
CANINE_2:CFA.1364.1.A1_AT similar to ribophorin II precursor cfa
CANINE_2:CFA.1364.1.A1_S_AT similar to ribophorin II precursor cfa
CANINE_2:CFA.21586.1.S1_S_AT similar to ribophorin II precursor cfa
CANINE_2:CFAAFFX.13838.1.S1_AT similar to ribophorin II precursor cfa
DROSOPHILA_2:1630630_AT dm
DROSGENOME1:153935_AT dm
CHICKEN:GGA.4485.2.S1_S_AT ribophorin II gga
CHICKEN:GGA.4485.3.S1_AT ribophorin II gga
CHICKEN:GGAAFFX.11607.1.S1_S_AT ribophorin II gga
HG-U133A:213399_X_AT ribophorin II hs
HG-U133A_2:213399_X_AT ribophorin II hs
HG-U133_PLUS_2:213399_X_AT ribophorin II hs
HG-U133A:208689_S_AT ribophorin II hs
HG-U133_PLUS_2:208689_S_AT ribophorin II hs
HG-FOCUS:208689_S_AT ribophorin II hs
HG-U133A_2:208689_S_AT ribophorin II hs
HUGENEFL:Y00282_AT ribophorin II hs
U133_X3P:G13097707_3P_A_AT ribophorin II hs
HG-U133A_2:213491_X_AT ribophorin II hs
HG-U133_PLUS_2:213491_X_AT ribophorin II hs
HG-U133A:213491_X_AT ribophorin II hs
HG-U95AV2:36676_AT ribophorin II hs
HG-U95D:69127_AT ribophorin II hs
MOE430A:1418896_A_AT ribophorin II mm
MOUSE430A_2:1418896_A_AT ribophorin II mm
MOUSE430_2:1418896_A_AT ribophorin II mm
MU11KSUBA:D31717_S_AT ribophorin II mm
MG-U74AV2:94077_F_AT ribophorin II mm
MG-U74AV2:94076_I_AT ribophorin II mm
MG-U74CV2:170558_AT ribophorin II mm
MU19KSUBA:TC14477_I_AT Ribophorin II, mRNA (cDNA clone IMAGE:4206643) mm
MU19KSUBA:TC14477_S_AT Ribophorin II, mRNA (cDNA clone IMAGE:4206643) mm
MU19KSUBB:TC30433_AT Ribophorin II, mRNA (cDNA clone IMAGE:4206643) mm
RG-U34A:X55298_AT ribophorin II rn
RAE230A:1398776_AT ribophorin II rn
RAT230_2:1398776_AT ribophorin II rn
RAE230B:1381319_AT Ribophorin II rn
RAT230_2:1381319_AT Ribophorin II rn
RAE230A:1385373_AT Ribophorin II rn
RAT230_2:1385373_AT Ribophorin II rn
RG-U34A:RC_AA875324_AT Ribophorin II rn
Protein Similarities
Method ID Description E-Value
blast AAB42275 Hypothetical protein M01A10.3 [Caenorhabditis elegans] ref|NP_491624.1| M01A10.3 [Caenorhabditis elegans] 1.0E-149
blast CAE68911 Hypothetical protein CBG14887 [Caenorhabditis briggsae] 1.0E-118
blast NP_001011468 hypothetical protein LOC496959 [Xenopus tropicalis] gb|AAH88596.1| Hypothetical LOC496959 [Xenopus tropicalis] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR008814 EMBL-EBI Ribophorin II 1.3E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491624.1 3 187-209,221-243,247-269
M01A10.3 3 187-209,221-243,247-269
SNAP00000009741 3 187-209,221-243,247-269
GENEFINDER00000009751 3 187-209,221-243,247-269
Sequence
Target Sequence 
>C. ELEGANS:184681_S_AT
tgttcttcgtaccgctgctaaatcattccgcaaccttagtggacagttcaagatcagcct
tctcgttggagacgtaactatcaagaatccaatcaactggcaatttgctaacatcgacgc
ggctctcccagttgcctacgagccaaccccaaaatcacaacaagtgcactttgagccatt
gaacgaaatctcccatatcttccgtcaaccagaaaagagaccatcagcgctcatttctga
tttgttcaccattatctgcctttccccacttctcattcttgtcgtattgtggtcccaagt
tggaataaatttccaaaatgctccagcttcaccatgggttccaatcttccacgtcggact
tattggaatcttcgggatctatttcatgttctgggttcaattcgatatgttcgtaactct
caagtacctcgctgttcttggattcctcacttttgttgccggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTTCGTACCGCTGCTAAATCA 261 559 345 Antisense
GACAGTTCAAGATCAGCCTTCTCGT 218 369 386 Antisense
TGAACGAAATCTCCCATATCTTCCG 145 573 524 Antisense
AAAGAGACCATCAGCGCTCATTTCT 699 121 558 Antisense
TGATTTGTTCACCATTATCTGCCTT 520 563 582 Antisense
CCACTTCTCATTCTTGTCGTATTGT 575 275 610 Antisense
CAGCTTCACCATGGGTTCCAATCTT 186 205 668 Antisense
CCAATCTTCCACGTCGGACTTATTG 245 275 685 Antisense
CTTCGGGATCTATTTCATGTTCTGG 9 221 714 Antisense
TGTTCGTAACTCTCAAGTACCTCGC 138 549 752 Antisense
GATTCCTCACTTTTGTTGCCGGAAA 62 427 785 Antisense
Sequence Source Affymetrix Proprietary Database