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[184680_at]

Description Y54E2A.10 /REP_DB=WormBase Gene ID /WP=CE20309 /TR=Q9XWI3 /GB=CAA21684.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 14      4grp_total > 21      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 196.8
(3)
P 		187.8
(2)
P 		144
(-3)
P 		191.2
(2.4)
P 		53
B 199.4
(3)
P 		153
(0.1)
P 		103.1
(-3)
P 		198.6
(3)
P 		96
C 193.6
(0.7)
P 		143.4
(-3)
P 		168.4
(-1.1)
P 		224
(3)
P 		81
avr 196.6
(2.3) 		161.4
(-0.9) 		138.5
(-3) 		204.6
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 260.8
(3)
P 		201.8
(0.6)
P 		146.2
(-1.6)
P 		134
(-2.1)
P 		120.7
(-2.6)
P 		110.4
(-3)
P 		150
B 186.3
(0.5)
P 		161
(-1.4)
P 		165.5
(-1)
P 		220.7
(3)
P 		162.1
(-1.3)
P 		138.4
(-3)
P 		82
C 183.6
(0.3)
P 		254.3
(3)
P 		151.1
(-0.9)
P 		157.7
(-0.7)
P 		96.8
(-3)
P 		135.5
(-1.5)
P 		158
avr 210.2
(3) 		205.7
(2.7) 		154.3
(-1) 		170.8
(0.2) 		126.5
(-3) 		128.1
(-2.9) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 71.7
(3)
P 		40.8
(-1.2)
P 		37.7
(-1.7)
P 		28
(-3)
P 		44
B 63.6
(3)
P 		37.8
(-0.9)
P 		23.9
(-3)
P 		42.3
(-0.2)
P 		40
C 64.1
(3)
P 		41.2
(-2.2)
P 		58.7
(1.8)
P 		37.8
(-3)
P 		26
avr 66.5
(3) 		39.9
(-2.2) 		40.1
(-2.2) 		36
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 48.1
(-0.2)
P 		71.8
(3)
P 		31.8
(-2.3)
P 		34
(-2.1)
P 		36.4
(-1.7)
P 		26.9
(-3)
P 		45
B 64.8
(2.7)
P 		53.6
(0.1)
P 		40.2
(-3)
P 		58.4
(1.2)
P 		65.9
(3)
P 		51.6
(-0.3)
P 		26
C 68.1
(1.8)
P 		77.6
(3)
P 		38.5
(-2.1)
P 		31.7
(-2.9)
P 		31.3
(-3)
P 		45.4
(-1.2)
P 		46
avr 60.3
(1.6) 		67.7
(3) 		36.8
(-3) 		41.4
(-2.1) 		44.5
(-1.5) 		41.3
(-2.1) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3901
Sequence Type Exemplar sequence
Representative Public ID Y54E2A.10 NCBI
Target Description Y54E2A.10 /REP_DB=WormBase Gene ID /WP=CE20309 /TR=Q9XWI3 /GB=CAA21684.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064665 NCBI Caenorhabditis elegans Y54E2A.10 (Y54E2A.10) mRNA, complete cds. 11/11 None
SNAP00000025437 ENSEMBL cdna:SNAP chromosome:CEL140:II:14790999:14792444:1 11/11 None
GENEFINDER00000025447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14791074:14792444:1 11/11 None
Y54E2A.10 ENSEMBL cdna:known chromosome:CEL140:II:14790991:14792444:1 gene:Y54E2A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14790995-14792441(+) 96.08 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E2A.10
Entrez Gene 175137 Entrez gene
SwissProt Q9XWI3 EMBL-EBI
WormBase CE20309 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21684 Hypothetical protein Y54E2A.10 [Caenorhabditis elegans] ref|NP_497066.1| Y54E2A.10 [Caenorhabditis elegans] 1.0E-162
blast CAA21684 Hypothetical protein Y54E2A.10 [Caenorhabditis elegans] ref|NP_497066.1| Y54E2A.10 [Caenorhabditis elegans] 1.0E-152
blast CAE60608 Hypothetical protein CBG04248 [Caenorhabditis briggsae] 1.0E-145
blast CAE60608 Hypothetical protein CBG04248 [Caenorhabditis briggsae] 1.0E-141
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497066.1 1 219-241
Y54E2A.10 1 219-241
SNAP00000025437 1 219-241
GENEFINDER00000025447 1 210-232
Sequence
Target Sequence 
>C. ELEGANS:184680_AT
gagaatgtgatcccacttacacgtcatcatcgatatccacgtcgacaattttatatgcgc
agttgttgtcgctgcggtggcaagagcactgtgacgctgacgtcatcttcgtctacatcc
aaagttggcagcccgaacgacttcgaactccgctgctcattccacttttcggaaaccagt
ggccacatcttcgcagattctccatcccaatcgtcacgtcggccagggagacgacgctaa
cctcgctggaaaacgccatgtcacacgccagccgactaatccacgtggatttgtcgccgg
ctcacgcggcgattccacgttgggctctcgcgtttggtggaataatgctgtcagttgtgg
tcgcggcgatgtacgtggcaaattgtattagtgaaaaaatgggtcaaaggcggcaaaaat
cgctggtcccaaaacgtggaaacgagaagttccgggcgggattcggaggcggagtgatga
tgaatagctcggggagccagaagaaaaagtcggtgatgatgttccggacgttctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATGTGATCCCACTTACACGTC 581 391 347 Antisense
CAGTTGTTGTCGCTGCGGTGGCAAG 346 205 406 Antisense
GTGGCAAGAGCACTGTGACGCTGAC 269 491 423 Antisense
TGACGCTGACGTCATCTTCGTCTAC 175 571 438 Antisense
CGACGCTAACCTCGCTGGAAAACGC 362 247 578 Antisense
GCTGGAAAACGCCATGTCACACGCC 44 295 591 Antisense
GGCTCTCGCGTTTGGTGGAATAATG 429 539 669 Antisense
TAATGCTGTCAGTTGTGGTCGCGGC 386 635 689 Antisense
GTCGCGGCGATGTACGTGGCAAATT 243 475 706 Antisense
AGGCGGCAAAAATCGCTGGTCCCAA 10 9 754 Antisense
TGATGATGTTCCGGACGTTCTCAAA 267 567 860 Antisense
Sequence Source Affymetrix Proprietary Database