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[184679_at]

Description Y67A10A.7 /REP_DB=WormBase Gene ID /WP=CE24568 /TR=Q9U1V2 /GB=CAB60448.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 04      4grp_total > 30      6grp_highest_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 561
(3)
P 		254.9
(-1.4)
P 		139.2
(-3)
P 		395.5
(0.6)
P 		422
B 409.8
(3)
P 		260.6
(-1)
P 		184.2
(-3)
P 		398.6
(2.7)
P 		226
C 556.8
(3)
P 		231.3
(-2.4)
P 		193.7
(-3)
P 		357.1
(-0.3)
P 		363
avr 509.2
(3) 		248.9
(-1.6) 		172.4
(-3) 		383.7
(0.8) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 435.8
(3)
P 		416.3
(2.5)
P 		263.7
(-1.1)
P 		297
(-0.3)
P 		276.3
(-0.8)
P 		182.6
(-3)
P 		253
B 491.4
(3)
P 		384.6
(1)
P 		317.2
(-0.3)
P 		319.4
(-0.2)
P 		337.7
(0.1)
P 		172.9
(-3)
P 		319
C 481.3
(3)
P 		395.2
(1.2)
P 		355.4
(0.4)
P 		309.1
(-0.6)
P 		242.4
(-2)
P 		195.8
(-3)
P 		286
avr 469.5
(3) 		398.7
(1.5) 		312.1
(-0.3) 		308.5
(-0.4) 		285.5
(-0.9) 		183.8
(-3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 204.2
(3)
P 		55.3
(-2.3)
P 		36.4
(-3)
P 		57.9
(-2.2)
P 		168
B 130.7
(3)
P 		64.4
(-1.5)
P 		42.7
(-3)
P 		84.9
(-0.1)
P 		88
C 184.3
(3)
P 		66.5
(-2.7)
P 		67.5
(-2.6)
P 		60.2
(-3)
P 		124
avr 173.1
(3) 		62.1
(-2.4) 		48.9
(-3) 		67.7
(-2.1) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 80.3
(-0.9)
P 		148.1
(3)
P 		57.4
(-2.3)
P 		75.3
(-1.2)
P 		83.4
(-0.7)
P 		44.5
(-3)
P 		104
B 171
(3)
P 		128
(0.6)
P 		77
(-2.3)
P 		84.6
(-1.9)
P 		137.2
(1.1)
P 		64.5
(-3)
P 		107
C 178.4
(3)
P 		120.6
(0)
P 		90.5
(-1.5)
P 		62.2
(-3)
P 		78.4
(-2.2)
P 		65.5
(-2.8)
P 		116
avr 143.2
(3) 		132.2
(2.2) 		75
(-1.8) 		74
(-1.9) 		99.7
(-0.1) 		58.2
(-3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8420
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.7 NCBI
Target Description Y67A10A.7 /REP_DB=WormBase Gene ID /WP=CE24568 /TR=Q9U1V2 /GB=CAB60448.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070343 NCBI Caenorhabditis elegans Y67A10A.7 (Y67A10A.7) mRNA, complete cds. 11/11 None
SNAP00000008015 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14377698:14379357:1 10/11 None
GENEFINDER00000008021 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14374096:14379127:1 11/11 None
Y67A10A.7 ENSEMBL cdna:known chromosome:CEL140:IV:14374096:14379357:1 gene:Y67A10A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008014 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14374101-14379133(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.7
Entrez Gene 190509 Entrez gene
SwissProt Q9U1V2 EMBL-EBI
WormBase CE36248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60448 Hypothetical protein Y67A10A.7 [Caenorhabditis elegans] ref|NP_502744.2| Y67A10A.7 [Caenorhabditis elegans] 0.0
blast CAB60448 Hypothetical protein Y67A10A.7 [Caenorhabditis elegans] ref|NP_502744.2| Y67A10A.7 [Caenorhabditis elegans] 1.0E-175
blast CAE73995 Hypothetical protein CBG21629 [Caenorhabditis briggsae] 1.0E-173
blast CAE73995 Hypothetical protein CBG21629 [Caenorhabditis briggsae] 1.0E-166
blast CAB60448 Hypothetical protein Y67A10A.7 [Caenorhabditis elegans] ref|NP_502744.2| Y67A10A.7 [Caenorhabditis elegans] 1.0E-100
blast CAE73995 Hypothetical protein CBG21629 [Caenorhabditis briggsae] 6.0E-91
Sequence
Target Sequence 
>C. ELEGANS:184679_AT
ggccaagatctactcgagttattttgttacagtgtattgcaaatatggcagtggcttctg
ataatatggaagtgatgaaacatgctctaaaccatatcgtcttccgattaagttctgaag
atgaaatggaagttgtagttgcaatgcaagcactcacaaatctttcaataaatattcgaa
aggatcaaattccgaaatttgttccagtaataccacattgtcttaatagattatgggttc
gtggagaagtgaatttaaatgctcttcggctacttgttaatctctcatgttgtcctgata
tggttccatttttacttggaaataagtcagtttctggtcttcttcgaatattggatactg
atcgagaagaggttcttatcagagcagtcacgtggattttatgtacgacttctgcagttc
aggcgttgaatattacgtatgaaaggatagctgaacataatttggatccattccataatc
catctcacactctctatttctctatatacggcccaaaaggacgggaggaactggaagcac
aagccaggcatctgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAAGATCTACTCGAGTTATTTT 23 545 389 Antisense
GCTCTAAACCATATCGTCTTCCGAT 232 297 472 Antisense
ATGCAAGCACTCACAAATCTTTCAA 591 43 532 Antisense
GTTCCAGTAATACCACATTGTCTTA 175 441 589 Antisense
TAAATGCTCTTCGGCTACTTGTTAA 561 641 644 Antisense
ACTTGTTAATCTCTCATGTTGTCCT 354 103 660 Antisense
GTCAGTTTCTGGTCTTCTTCGAATA 322 467 714 Antisense
GTTCTTATCAGAGCAGTCACGTGGA 444 443 760 Antisense
GTACGACTTCTGCAGTTCAGGCGTT 558 457 791 Antisense
TCTCTATTTCTCTATATACGGCCCA 106 613 879 Antisense
GAAGCACAAGCCAGGCATCTGACAG 453 341 922 Antisense
Sequence Source Affymetrix Proprietary Database