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[184678_at]

Description F35D11.1 /REP_DB=WormBase Gene ID /WP=CE02712 /TR=Q20041 /GB=AAA68748.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 28      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 78
(-0.9)
P 		75.9
(-1.1)
A 		44.3
(-3)
A 		142.4
(3)
P 		98
B 87.7
(-1.2)
P 		125.1
(2.8)
P 		70.2
(-3)
M 		127.1
(3)
P 		57
C 90.9
(-0.6)
P 		68.1
(-1.8)
A 		43.7
(-3)
P 		163.8
(3)
P 		120
avr 85.5
(-0.9) 		89.7
(-0.6) 		52.7
(-3) 		144.4
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 147.4
(3)
P 		74.4
(-0.8)
P 		52.6
(-1.9)
A 		46.3
(-2.2)
A 		69.2
(-1.1)
A 		31.8
(-3)
A 		116
B 93.6
(3)
P 		42.1
(-3)
A 		52.3
(-1.8)
P 		56.6
(-1.3)
M 		57.8
(-1.2)
A 		52.3
(-1.8)
A 		52
C 83.3
(1.7)
P 		105.7
(3)
P 		4.3
(-3)
A 		66.8
(0.7)
A 		61.4
(0.4)
A 		53.9
(-0.1)
P 		101
avr 108.1
(3) 		74.1
(0.2) 		36.4
(-3) 		56.6
(-1.3) 		62.8
(-0.8) 		46
(-2.2) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 28.4
(3)
P 		16.5
(-1.3)
A 		11.6
(-3)
A 		20.9
(0.3)
P 		17
B 28
(1.8)
P 		30.9
(3)
P 		16.3
(-3)
M 		27.1
(1.4)
P 		15
C 30.1
(3)
P 		19.6
(-1.2)
A 		15.2
(-3)
P 		27.6
(2)
P 		15
avr 28.8
(3) 		22.3
(0.3) 		14.4
(-3) 		25.2
(1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 27.2
(3)
P 		26.5
(2.8)
P 		11.5
(-1.8)
A 		11.8
(-1.7)
A 		20.9
(1.1)
A 		7.7
(-3)
A 		20
B 32.6
(3)
P 		14
(-2.6)
A 		12.7
(-3)
P 		15
(-2.3)
M 		23.5
(0.3)
A 		19.5
(-0.9)
A 		20
C 30.9
(2.7)
P 		32.2
(3)
P 		1.1
(-3)
A 		13.4
(-0.6)
A 		19.9
(0.6)
A 		18
(0.3)
P 		31
avr 30.2
(3) 		24.2
(1.3) 		8.4
(-3) 		13.4
(-1.6) 		21.4
(0.6) 		15.1
(-1.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4235
Sequence Type Exemplar sequence
Representative Public ID F35D11.1 NCBI
Target Description F35D11.1 /REP_DB=WormBase Gene ID /WP=CE02712 /TR=Q20041 /GB=AAA68748.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062417 NCBI Caenorhabditis elegans F35D11.1 (F35D11.1) mRNA, complete cds. 11/11 None
SNAP00000013545 ENSEMBL cdna:SNAP chromosome:CEL140:II:4627016:4627722:1 11/11 None
GENEFINDER00000013547 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4627016:4627722:1 11/11 None
F35D11.1 ENSEMBL cdna:known chromosome:CEL140:II:4627016:4627722:1 gene:F35D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4627014-4627721(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.1
Entrez Gene 185279 Entrez gene
SwissProt Q20041 EMBL-EBI
WormBase CE02712 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68748 Hypothetical protein F35D11.1 [Caenorhabditis elegans] ref|NP_494818.1| F35D11.1 [Caenorhabditis elegans] 2.0E-81
blast CAE65411 Hypothetical protein CBG10363 [Caenorhabditis briggsae] 9.0E-13
blast AAA82358 Hypothetical protein C25G6.1 [Caenorhabditis elegans] ref|NP_508235.1| C25G6.1 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:184678_AT
atggccttctcagtatttctaatcttcctgctcattcgaatcggagattctctgttatgt
catcaatgtgagggatggcgtggccataaagacggaggaaatgagaactcgtgtctcaag
tataataataactgcgagacaaacgtgttctgcgtgaagatcactgaaccgatgacgaag
gaggcgacatatgagccatatagatcagagtgctggcaccagaacaacctcgttgttggt
cccggcaactcgaccaccgtccaaaatgagtgctacacatttttcgatcaagcaacacct
ccaaaacgttggacatattgcttctgcaacagtagcaactactgtaacaccggtcattca
acatttcaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCTTCTCAGTATTTCTAATCT 672 53 13 Antisense
TTCTAATCTTCCTGCTCATTCGAAT 92 691 29 Antisense
GGAGATTCTCTGTTATGTCATCAAT 15 519 55 Antisense
AACTGCGAGACAAACGTGTTCTGCG 584 141 142 Antisense
GAGTGCTGGCACCAGAACAACCTCG 137 401 220 Antisense
CAGAACAACCTCGTTGTTGGTCCCG 465 203 232 Antisense
CTCGACCACCGTCCAAAATGAGTGC 430 233 261 Antisense
TTTTTCGATCAAGCAACACCTCCAA 227 675 292 Antisense
AAAACGTTGGACATATTGCTTCTGC 284 131 315 Antisense
GCAACTACTGTAACACCGGTCATTC 621 319 347 Antisense
ACCGGTCATTCAACATTTCAAACTT 169 89 361 Antisense
Sequence Source Affymetrix Proprietary Database