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[184677_at]

Description Y63D3A.11 /REP_DB=WormBase Gene ID /WP=CE25527 /TR=Q9NA68 /GB=CAB76748.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 18
(-2.9)
A 		36.2
(3)
A 		17.7
(-3)
A 		28.7
(0.6)
A 		19
B 14.6
(-1.8)
A 		37.3
(1.3)
M 		50.1
(3)
A 		5.7
(-3)
A 		44
C 28.5
(0.7)
A 		25.4
(0.3)
A 		2.2
(-3)
A 		44.3
(3)
A 		42
avr 20.4
(-3) 		33
(3) 		23.3
(-1.6) 		26.2
(-0.2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 43.3
(3)
A 		16
(-1.4)
A 		20.5
(-0.7)
A 		10.3
(-2.4)
A 		35.1
(1.7)
A 		6.3
(-3)
A 		37
B 10.3
(-1.9)
A 		4.2
(-3)
A 		36.4
(3)
P 		22.3
(0.4)
A 		10.3
(-1.9)
A 		18.5
(-0.3)
A 		32
C 26.1
(-1)
P 		13.8
(-2.6)
A 		24.7
(-1.2)
A 		56.5
(3)
A 		11.1
(-3)
A 		22.8
(-1.5)
A 		45
avr 26.6
(2) 		11.3
(-3) 		27.2
(2.2) 		29.7
(3) 		18.8
(-0.6) 		15.9
(-1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.5
(0.7)
A 		7.9
(3)
A 		4.6
(-2.4)
A 		4.2
(-3)
A 		4
B 4.7
(-1)
A 		9.2
(1.6)
M 		11.6
(3)
A 		1.2
(-3)
A 		10
C 9.4
(3)
A 		7.3
(1.5)
A 		0.8
(-3)
A 		7.5
(1.7)
A 		9
avr 6.9
(1.1) 		8.1
(3) 		5.7
(-0.8) 		4.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8
(1.3)
A 		5.7
(-0.2)
A 		4.5
(-1)
A 		2.6
(-2.3)
A 		10.6
(3)
A 		1.5
(-3)
A 		9
B 3.6
(-1.2)
A 		1.4
(-3)
A 		8.8
(3)
P 		5.9
(0.6)
A 		4.2
(-0.7)
A 		6.9
(1.5)
A 		7
C 9.7
(1.7)
P 		4.2
(-2.5)
A 		6.3
(-0.9)
A 		11.4
(3)
A 		3.6
(-3)
A 		7.6
(0.1)
A 		8
avr 7.1
(3) 		3.8
(-3) 		6.5
(1.9) 		6.6
(2.1) 		6.1
(1.2) 		5.3
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.856
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.11 NCBI
Target Description Y63D3A.11 /REP_DB=WormBase Gene ID /WP=CE25527 /TR=Q9NA68 /GB=CAB76748.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061057 NCBI Caenorhabditis elegans Y63D3A.11 (Y63D3A.11) mRNA, complete cds. 11/11 None
SNAP00000002944 ENSEMBL cdna:SNAP chromosome:CEL140:I:14093806:14094803:-1 10/11 None
Y63D3A.11 ENSEMBL cdna:known chromosome:CEL140:I:14093806:14094803:-1 gene:Y63D3A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14093736-14094734(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.11
Entrez Gene 190472 Entrez gene
SwissProt Q9NA68 EMBL-EBI
WormBase CE25527 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76748 Hypothetical protein Y63D3A.11 [Caenorhabditis elegans] ref|NP_493458.1| Y63D3A.11 [Caenorhabditis elegans] 1.0E-142
blast CAB76748 Hypothetical protein Y63D3A.11 [Caenorhabditis elegans] ref|NP_493458.1| Y63D3A.11 [Caenorhabditis elegans] 1.0E-138
blast CAA21711 Hypothetical protein Y63D3A.9 [Caenorhabditis elegans] ref|NP_493456.1| Y63D3A.9 [Caenorhabditis elegans] 3.0E-88
blast CAA21711 Hypothetical protein Y63D3A.9 [Caenorhabditis elegans] ref|NP_493456.1| Y63D3A.9 [Caenorhabditis elegans] 2.0E-87
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 8.0E-49
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Sequence
Target Sequence 
>C. ELEGANS:184677_AT
tggacgtgccactatgttttttcgaaagagctttgaaaactttctgatcgccttcaatca
ttttgaagttgaacatgtatatgtaaatatagaaaatgacataccttataacctggaaga
aataaaagtggtgaaagaccttttcgttcgatctgctgatcgtgggatattcagtcagtt
ctaccgtactgctaacaaaataagcttgtcaaacagatctcttcacaatgataaatctag
aaatttcttcacagagaacattgattcactttggttggattctagttttcatctggaatt
taacgatttattagccatcaatgctaagaaagcagtgatctatcgcccatttaccctatc
cgatttgaatctgttccttcaacactggagaaaaggatcaaatcctagactggaagagat
ttatattggactggaagaggacaatctcgtagacttcaatgaaacactactaaagggcat
cgtacattggaaatcttgcctatccaaagtgtataacaatagcccatcgatcgaaggact
ggagattgagcggaccgatgggacccgagcaatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACGTGCCACTATGTTTTTTCGA 54 549 192 Antisense
GGTGAAAGACCTTTTCGTTCGATCT 426 499 321 Antisense
GATCGTGGGATATTCAGTCAGTTCT 661 417 349 Antisense
CAGTCAGTTCTACCGTACTGCTAAC 598 207 363 Antisense
ATAAGCTTGTCAAACAGATCTCTTC 433 25 391 Antisense
ACATTGATTCACTTTGGTTGGATTC 357 103 449 Antisense
GGTTGGATTCTAGTTTTCATCTGGA 130 509 464 Antisense
GAGGACAATCTCGTAGACTTCAATG 368 405 628 Antisense
AGGGCATCGTACATTGGAAATCTTG 103 59 665 Antisense
GGAAATCTTGCCTATCCAAAGTGTA 376 527 680 Antisense
GACCGATGGGACCCGAGCAATCATA 257 383 744 Antisense
Sequence Source Affymetrix Proprietary Database