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[184676_s_at]

Description ZK1290.8 /REP_DB=WormBase Gene ID /WP=CE02087 /TR=Q09635 /GB=AAB93318.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      6grp_highest_nonorm > 02      6grp_total > 09      4grp_total > 49      6grp_cgc > 0      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4543
1 2 3 4 range
A 7.8
(-3)
A 		4547.5
(3)
P 		4010.1
(2.3)
P 		136
(-2.8)
A 		4540
B 8
(-3)
A 		4106
(3)
P 		3820.6
(2.6)
P 		137.9
(-2.8)
A 		4098
C 4.6
(-3)
A 		4219.9
(3)
P 		3600.5
(2.1)
P 		102.6
(-2.9)
A 		4215
avr 6.8
(-3) 		4291.1
(3) 		3810.4
(2.3) 		125.5
(-2.8) 		4284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4032
1 2 3 4 5 6 range
A 4390.9
(3)
P 		2471.6
(-0.1)
P 		2020.9
(-0.8)
P 		3244.2
(1.2)
P 		1533.8
(-1.6)
P 		637.1
(-3)
P 		3754
B 3607.6
(3)
P 		2002.2
(-0.3)
P 		1564.6
(-1.3)
P 		3237.1
(2.2)
P 		1692.5
(-1)
P 		723.8
(-3)
P 		2884
C 4655.9
(3)
P 		2050.7
(-0.9)
P 		2268.2
(-0.6)
P 		3039.7
(0.6)
P 		1556.2
(-1.6)
P 		624
(-3)
P 		4032
avr 4218.1
(3) 		2174.8
(-0.4) 		1951.2
(-0.8) 		3173.7
(1.2) 		1594.2
(-1.4) 		661.6
(-3) 		3557
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1253
1 2 3 4 range
A 2.8
(-3)
A 		987.1
(2.6)
P 		1048.3
(3)
P 		19.9
(-2.9)
A 		1046
B 2.6
(-3)
A 		1014.1
(3)
P 		885.3
(2.2)
P 		29.4
(-2.8)
A 		1012
C 1.5
(-3)
A 		1213.2
(2.8)
P 		1254.9
(3)
P 		17.3
(-2.9)
A 		1253
avr 2.3
(-3) 		1071.5
(3) 		1062.8
(3) 		22.2
(-2.9) 		1069

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1571
1 2 3 4 5 6 range
A 809.4
(2.4)
P 		879
(3)
P 		440.1
(-0.6)
P 		822.8
(2.5)
P 		462.8
(-0.4)
P 		155.1
(-3)
P 		724
B 1255.3
(3)
P 		666.5
(-0.6)
P 		379.9
(-2.3)
P 		857.4
(0.6)
P 		687.6
(-0.5)
P 		269.9
(-3)
P 		985
C 1725.7
(3)
P 		625.7
(-1.4)
P 		577.3
(-1.5)
P 		611.3
(-1.4)
P 		503.6
(-1.8)
P 		208.9
(-3)
P 		1517
avr 1263.5
(3) 		723.7
(-0.1) 		465.8
(-1.5) 		763.8
(0.2) 		551.3
(-1.1) 		211.3
(-3) 		1052
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184676_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5087
Sequence Type Exemplar sequence
Representative Public ID ZK1290.8 NCBI
Target Description ZK1290.8 /REP_DB=WormBase Gene ID /WP=CE02087 /TR=Q09635 /GB=AAB93318.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063179 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-10) (wrt-10) mRNA, complete cds. 11/11 None
SNAP00000002672 ENSEMBL cdna:SNAP chromosome:CEL140:II:7533419:7534369:-1 11/11 None
GENEFINDER00000002690 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7533419:7534369:-1 11/11 None
ZK1290.8 ENSEMBL cdna:known chromosome:CEL140:II:7533223:7534437:-1 gene:ZK1290.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7533415-7534366(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol wrt-10
Ensembl ZK1290.8
Entrez Gene 174224 Entrez gene
SwissProt Q09635 EMBL-EBI
WormBase CE02087 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93318 Warthog (hedgehog-like family) protein 10 [Caenorhabditis elegans] ref|NP_495580.1| WaRThog (hedgehog-like family) family member (wrt-10) [Caenorhabditis elegans] 1.0E-117
blast CAE67483 Hypothetical protein CBG12987 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:184676_S_AT
ttcttgccgtgctgaaaccgatgttttctccggaatgagatgggctccaaacggtgagag
catcttgctccgctgttgcacaatgcatgccaaaaacaagatttacgtaggaactgatgt
tgttgctgctggaagcttctacgaaggaggagaagttgctgaaaaggatctttatggaga
taagggtggagctgaatacgacttcgttgccaatgccagaactgaacaaggaggagttcg
tgtttgggtgtaccgtatgatctgtgccaagggagagaaaccggttgattttgatcctat
cactactacttctgctccaagagtcattaagactactccagcaccaacaactaccccaac
tgtggaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGCCGTGCTGAAACCGATGTT 242 687 210 Antisense
AACGGTGAGAGCATCTTGCTCCGCT 625 143 259 Antisense
TGCTCCGCTGTTGCACAATGCATGC 27 581 275 Antisense
GTTGTTGCTGCTGGAAGCTTCTACG 157 439 328 Antisense
GAATACGACTTCGTTGCCAATGCCA 345 327 403 Antisense
GAGTTCGTGTTTGGGTGTACCGTAT 473 397 443 Antisense
GTACCGTATGATCTGTGCCAAGGGA 7 459 459 Antisense
TTTGATCCTATCACTACTACTTCTG 496 667 499 Antisense
ACTACTACTTCTGCTCCAAGAGTCA 572 101 511 Antisense
GTCATTAAGACTACTCCAGCACCAA 651 467 532 Antisense
ACAACTACCCCAACTGTGGAGGAAG 77 77 556 Antisense
Sequence Source Affymetrix Proprietary Database