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[184675_at]

Description F53E10.3 /REP_DB=WormBase Gene ID /WP=CE10924 /TR=P91319 /GB=AAB42289.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 47.3
(-3)
A 		73.8
(-1.8)
A 		87.4
(-1.2)
A 		177.7
(3)
A 		130
B 70.2
(1.8)
A 		77.9
(3)
A 		37.8
(-3)
A 		53.7
(-0.6)
A 		40
C 65.4
(-1.9)
P 		77.9
(-1.2)
A 		45
(-3)
A 		157.4
(3)
P 		112
avr 61
(-2.6) 		76.5
(-1.4) 		56.7
(-3) 		129.6
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 118.3
(3)
A 		63
(-2.5)
M 		107.8
(2)
A 		58.2
(-3)
A 		87.1
(-0.1)
A 		102
(1.4)
A 		60
B 73.8
(3)
P 		72.6
(2.9)
P 		36.5
(-1.1)
A 		18.6
(-3)
A 		66.9
(2.3)
A 		31.9
(-1.6)
A 		55
C 59.8
(-1.7)
A 		74.1
(-0.9)
P 		52.4
(-2.1)
A 		139.6
(3)
A 		47.3
(-2.4)
A 		37.8
(-3)
A 		102
avr 84
(3) 		69.9
(-0.2) 		65.6
(-1.1) 		72.1
(0.3) 		67.1
(-0.8) 		57.2
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.2
(-2.3)
A 		16
(-3)
A 		22.8
(1.1)
A 		26
(3)
A 		10
B 22.4
(3)
A 		19.2
(1.6)
A 		8.8
(-3)
A 		11.5
(-1.8)
A 		14
C 21.6
(0.3)
P 		22.4
(0.7)
A 		15.7
(-3)
A 		26.5
(3)
P 		11
avr 20.4
(2) 		19.2
(0.7) 		15.8
(-3) 		21.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 21.8
(0.7)
A 		22.4
(1)
M 		23.5
(1.5)
A 		14.8
(-3)
A 		26.3
(3)
A 		24.8
(2.2)
A 		12
B 25.7
(2.6)
P 		24.2
(2.2)
P 		8.9
(-1.9)
A 		4.9
(-3)
A 		27.2
(3)
A 		11.9
(-1.1)
A 		22
C 22.2
(0.7)
A 		22.6
(0.9)
P 		13.3
(-2.8)
A 		28.1
(3)
A 		15.3
(-2)
A 		12.7
(-3)
A 		15
avr 23.2
(3) 		23.1
(2.9) 		15.2
(-3) 		15.9
(-2.5) 		22.9
(2.8) 		16.5
(-2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15139
Sequence Type Exemplar sequence
Representative Public ID F53E10.3 NCBI
Target Description F53E10.3 /REP_DB=WormBase Gene ID /WP=CE10924 /TR=P91319 /GB=AAB42289.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071313
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071313 NCBI Caenorhabditis elegans F53E10.3 (F53E10.3) mRNA, complete cds. None
F53E10.3 ENSEMBL cdna:known chromosome:CEL140:V:2604668:2607928:1 gene:F53E10.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2604356-2607928(+) 63.33 100.0
Public Domain and Genome References
Gene Title
Ensembl F53E10.3
Entrez Gene 186166 Entrez gene
SwissProt P91319 EMBL-EBI
WormBase CE36861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42289 Hypothetical protein F53E10.3 [Caenorhabditis elegans] ref|NP_503714.2| F53E10.3 [Caenorhabditis elegans] 3.0E-35
Sequence
Target Sequence 
>C. ELEGANS:184675_AT
gggaagcctgacatccgtgatatcaagccacgttgtaaaatttccaattcttggcatcag
gccccgctttttgaaaacaaaacttcttattttcagagcctccgctaattcgaccaataa
aaatgacacatttgaaaaagtttcagcgctctattctttttgcagccttttcagacaccc
gcttctagatttttctactggggattttgtcgaaatgtttactcatattcttaaattctt
tttttttttcaaatttgtttttgatgcaccatatgagctcttttggcatttcccacacca
atttcatctttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAGCCTGACATCCGTGATATCA 180 495 66 Antisense
TTTCCAATTCTTGGCATCAGGCCCC 23 667 106 Antisense
AAACTTCTTATTTTCAGAGCCTCCG 38 127 145 Antisense
TATTTTCAGAGCCTCCGCTAATTCG 164 661 153 Antisense
AAGTTTCAGCGCTCTATTCTTTTTG 100 157 203 Antisense
TCTTTTTGCAGCCTTTTCAGACACC 69 617 220 Antisense
TTCAGACACCCGCTTCTAGATTTTT 651 683 235 Antisense
GATTTTTCTACTGGGGATTTTGTCG 158 429 253 Antisense
TTGATGCACCATATGAGCTCTTTTG 463 705 326 Antisense
TATGAGCTCTTTTGGCATTTCCCAC 342 655 337 Antisense
CCCACACCAATTTCATCTTTTTCGA 145 259 357 Antisense
Sequence Source Affymetrix Proprietary Database