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[184673_at]

Description T27C10.2 /REP_DB=WormBase Gene ID /WP=CE19604 /TR=Q9TZM1 /GB=AAC67410.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 04      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 13.8
(-2.3)
A 		5.6
(-3)
A 		8.7
(-2.8)
A 		80
(3)
A 		74
B 34
(3)
A 		3.8
(-3)
A 		5.1
(-2.7)
A 		21
(0.4)
A 		30
C 6.9
(-2.6)
A 		8.1
(-2.4)
A 		3.8
(-3)
A 		47.5
(3)
A 		44
avr 18.2
(-1.3) 		5.8
(-3) 		5.9
(-3) 		49.5
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 5
(-2.5)
A 		4.3
(-2.7)
A 		35.6
(3)
A 		6.2
(-2.3)
A 		2.5
(-3)
A 		10.8
(-1.5)
A 		33
B 9.3
(-1.9)
A 		10.6
(-1.7)
A 		5.7
(-2.6)
A 		35.7
(3)
A 		3.5
(-3)
A 		3.5
(-3)
A 		32
C 5.3
(-2.6)
A 		16.7
(-1.3)
A 		3.2
(-2.9)
A 		53.9
(3)
A 		1.9
(-3)
A 		4.8
(-2.7)
A 		52
avr 6.5
(-2.2) 		10.5
(-1.4) 		14.8
(-0.5) 		31.9
(3) 		2.6
(-3) 		6.4
(-2.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5
(-0.8)
A 		1.2
(-3)
A 		2.3
(-2.4)
A 		11.7
(3)
A 		11
B 10.8
(3)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		4.5
(-0.8)
A 		10
C 2.3
(-2.1)
A 		2.3
(-2.1)
A 		1.3
(-3)
A 		8
(3)
A 		7
avr 6
(1.1) 		1.5
(-3) 		1.6
(-2.9) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		1.5
(-2.4)
A 		7.7
(3)
A 		1.6
(-2.3)
A 		0.8
(-3)
A 		2.6
(-1.4)
A 		7
B 3.2
(-1.6)
A 		3.5
(-1.4)
A 		1.4
(-2.9)
A 		9.5
(3)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		8
C 2
(-2.2)
A 		5.1
(-0.4)
A 		0.8
(-2.9)
A 		10.8
(3)
A 		0.6
(-3)
A 		1.6
(-2.4)
A 		10
avr 2
(-2) 		3.4
(-0.7) 		3.3
(-0.8) 		7.3
(3) 		0.9
(-3) 		1.8
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1554
Sequence Type Exemplar sequence
Representative Public ID T27C10.2 NCBI
Target Description T27C10.2 /REP_DB=WormBase Gene ID /WP=CE19604 /TR=Q9TZM1 /GB=AAC67410.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060440
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038121 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10907235:10910149:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060440 7/11 Cross Hyb Matching Probes A 
SNAP00000038114 7/11 Cross Hyb Matching Probes None
T27C10.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10907165-10909782(+) 81.67 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_492841 Serpentine Receptor, class T family member (srt-62) [Caenorhabditis elegans] gb|AAC67410.3| Serpentine receptor, class t protein 62 [Caenorhabditis elegans] 1.0E-157
blast CAE63869 Hypothetical protein CBG08434 [Caenorhabditis briggsae] 1.0E-133
blast NP_492842 Serpentine Receptor, class T family member (srt-61) [Caenorhabditis elegans] 1.0E-125
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038121 7 20-42,59-81,96-118,138-160,186-208,221-243,258-280
Sequence
Target Sequence 
>C. ELEGANS:184673_AT
attatgacacaaacctaccgtactcccatattgtccagaaaattgaaatgtgtattgaaa
ttggcgggattttcgtgtctgctttcttctatattttgattattattcgattattgaaca
caaagaaaaagtacttgatctcgaaaaattacaatgcagaggtcaagattttgattcaag
ctacagtaattacagtttattgtactgtgctcaatgtgctatggcataattattcggtga
gactggattgttctaaaattttaaatattcttcaaattttcaaagtatttcagtggatgc
ttcctcaacatttatggagctatacagcattgaactttatgtggatatgcaatagtgcag
tacatccaattatttattttattgttaataaccgcagaggaattttttcaatggttctga
taaacttttctaaaaattattcgaaaatatccgaacttgttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGACACAAACCTACCGTACTC 707 7 812 Antisense
CGTACTCCCATATTGTCCAGAAAAT 454 247 830 Antisense
AAATTGGCGGGATTTTCGTGTCTGC 255 113 869 Antisense
GTGTCTGCTTTCTTCTATATTTTGA 405 487 886 Antisense
TATTCGGTGAGACTGGATTGTTCTA 105 661 1042 Antisense
GTATTTCAGTGGATGCTTCCTCAAC 613 453 1096 Antisense
CTTCCTCAACATTTATGGAGCTATA 82 219 1111 Antisense
GGAGCTATACAGCATTGAACTTTAT 415 519 1127 Antisense
AGTGCAGTACATCCAATTATTTATT 113 61 1165 Antisense
AACCGCAGAGGAATTTTTTCAATGG 156 145 1201 Antisense
TCGAAAATATCCGAACTTGTTCAAT 450 601 1252 Antisense
Sequence Source Affymetrix Proprietary Database