[Home] | [Total List]

[184671_at]

Description T21E12.2 /REP_DB=WormBase Gene ID /WP=CE13880 /TR=P91486 /GB=AAK21470.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      4grp_high_8_8 > 24      6grp_total > 35      4grp_total > 47      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 177.2
(3)
P 		102.6
(-1.9)
P 		123.5
(-0.5)
P 		85
(-3)
A 		92
B 201.5
(3)
P 		83.9
(-3)
P 		84.5
(-3)
P 		107.6
(-1.8)
P 		118
C 181.1
(3)
P 		112
(-1.6)
P 		90.5
(-3)
P 		126.7
(-0.6)
P 		91
avr 186.6
(3) 		99.5
(-3) 		99.5
(-3) 		106.4
(-2.5) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 133.5
(3)
P 		122.9
(2)
P 		95.3
(-0.7)
P 		83.7
(-1.8)
P 		71.6
(-3)
P 		104.5
(0.2)
P 		62
B 112.8
(3)
P 		105.4
(1.9)
P 		83.1
(-1.5)
A 		73.1
(-3)
P 		83.9
(-1.4)
P 		91.3
(-0.2)
P 		40
C 101.7
(0.8)
P 		125.2
(3)
P 		108
(1.4)
A 		62
(-2.9)
P 		60.7
(-3)
P 		93.8
(0.1)
P 		65
avr 116
(2.8) 		117.8
(3) 		95.5
(0.1) 		72.9
(-2.9) 		72.1
(-3) 		96.5
(0.2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 64.5
(3)
P 		22.3
(-1.9)
P 		32.3
(-0.7)
P 		12.4
(-3)
A 		52
B 64.2
(3)
P 		20.7
(-2.9)
P 		19.6
(-3)
P 		22.9
(-2.6)
P 		45
C 59.9
(3)
P 		32.2
(-1.3)
P 		31.5
(-1.4)
P 		21.4
(-3)
P 		39
avr 62.9
(3) 		25.1
(-2.2) 		27.8
(-1.8) 		18.9
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 24.6
(-2)
P 		43.7
(3)
P 		20.8
(-3)
P 		21.2
(-2.9)
P 		21.6
(-2.8)
P 		25.4
(-1.8)
P 		23
B 39.2
(3)
P 		35.1
(1.8)
P 		20.2
(-2.8)
A 		19.4
(-3)
P 		34.1
(1.5)
P 		34.1
(1.5)
P 		20
C 37.7
(2.9)
P 		38.2
(3)
P 		27.5
(0.5)
A 		12.5
(-3)
P 		19.7
(-1.3)
P 		31.4
(1.4)
P 		26
avr 33.8
(1.5) 		39
(3) 		22.8
(-1.6) 		17.7
(-3) 		25.1
(-0.9) 		30.3
(0.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1543
Sequence Type Exemplar sequence
Representative Public ID T21E12.2 NCBI
Target Description T21E12.2 /REP_DB=WormBase Gene ID /WP=CE13880 /TR=P91486 /GB=AAK21470.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058964 NCBI Caenorhabditis elegans T21E12.2 (T21E12.2) mRNA, complete cds. 11/11 None
T21E12.2 ENSEMBL cdna:known chromosome:CEL140:I:4409693:4419306:1 gene:T21E12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041459 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4413774-4419306(+) 89.08 100.0
Public Domain and Genome References
Gene Title
Ensembl T21E12.2
Entrez Gene 3565755 Entrez gene
SwissProt P91486 EMBL-EBI
WormBase CE28687 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21470 Hypothetical protein T21E12.2 [Caenorhabditis elegans] ref|NP_491365.1| T21E12.2 [Caenorhabditis elegans] 0.0
blast C87755 protein T21E12.2 [imported] - Caenorhabditis elegans 1.0E-180
blast CAE66829 Hypothetical protein CBG12199 [Caenorhabditis briggsae] 4.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491365.1 2 328-350,357-379
T21E12.2 2 328-350,357-379
Sequence
Target Sequence 
>C. ELEGANS:184671_AT
ttgctggaatgtttcgcgtgctcatcagaagctgaaaactgtgtcgacatagcacatgcc
aacaacatatttcgtgtaattgtgtcagcacatgctcatctttttcttattcaagctctg
aatgtatcatcacttcttcttgctcgaaccacctcgaatctagttgccatcaattatttg
gctcggcaaaatgataaaattcaacaaaaattgattgctctgttggaaacatcagaatca
agtgagaatgcgtcgaaggaagatattcgacaaatgcttcttctgaagaatgtagtagtg
acacagagattgaactcacttcaacagagagcactaccgggaattgagaatgtcaaaaac
atctatcctttgcctcagcatctcctaaaaaaaagaagcattcctatagaaagtgttcat
aataaaatcgagaagaacctcgccacaactactactactttcttgttgcattcaatgctt
cttctcttcctttatcatttctttttcctccttgctctcctccttcaaacaaacattcgt
actcacctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTGGAATGTTTCGCGTGCTCAT 258 701 640 Antisense
GTTTCGCGTGCTCATCAGAAGCTGA 465 451 650 Antisense
GTGTCGACATAGCACATGCCAACAA 352 487 680 Antisense
GTCAGCACATGCTCATCTTTTTCTT 354 465 723 Antisense
ACCTCGAATCTAGTTGCCATCAATT 48 89 790 Antisense
GATATTCGACAAATGCTTCTTCTGA 396 427 901 Antisense
CACTTCAACAGAGAGCACTACCGGG 338 197 956 Antisense
CAAAAACATCTATCCTTTGCCTCAG 454 191 993 Antisense
TTTGCCTCAGCATCTCCTAAAAAAA 441 663 1008 Antisense
CGAGAAGAACCTCGCCACAACTACT 110 251 1068 Antisense
CAAACAAACATTCGTACTCACCTCC 24 191 1165 Antisense
Sequence Source Affymetrix Proprietary Database