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[184670_at]

Description Y49F6B.3 /REP_DB=WormBase Gene ID /WP=CE25337 /TR=Q9N4U4 /GB=AAF60730.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.2
(3)
A 		18
(1)
A 		3.3
(-3)
A 		12.9
(-0.4)
A 		22
B 3.8
(-1.6)
A 		7.9
(1.5)
A 		1.9
(-3)
A 		9.9
(3)
A 		8
C 2.2
(-3)
A 		4
(0.9)
A 		3.4
(-0.4)
A 		5
(3)
A 		3
avr 10.4
(3) 		10
(2.7) 		2.9
(-3) 		9.3
(2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.6
(-2.5)
A 		1.3
(-3)
A 		7.9
(-0.5)
A 		3
(-2.3)
A 		16.9
(3)
A 		4.2
(-1.9)
A 		16
B 1.8
(-3)
A 		6.9
(3)
A 		1.9
(-2.9)
A 		3.3
(-1.2)
A 		2.6
(-2.1)
A 		2.8
(-1.8)
A 		5
C 2.6
(-3)
A 		8.8
(0.7)
A 		2.9
(-2.8)
A 		6.7
(-0.5)
A 		12.6
(3)
A 		3.4
(-2.5)
A 		10
avr 2.3
(-3) 		5.7
(-0.6) 		4.2
(-1.6) 		4.3
(-1.6) 		10.7
(3) 		3.5
(-2.1) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.2
(3)
A 		3.9
(-0.8)
A 		0.9
(-3)
A 		1.9
(-2.3)
A 		8
B 1.2
(-0.2)
A 		1.9
(2.3)
A 		0.4
(-3)
A 		2.1
(3)
A 		2
C 0.7
(-3)
A 		1.2
(3)
A 		1.2
(3)
A 		0.8
(-1.8)
A 		1
avr 3.7
(3) 		2.3
(0.1) 		0.8
(-3) 		1.6
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.5
(-3)
A 		1.7
(-1.4)
A 		0.8
(-2.6)
A 		5.1
(3)
A 		1
(-2.3)
A 		5
B 0.6
(-2.7)
A 		2.3
(3)
A 		0.5
(-3)
A 		0.9
(-1.7)
A 		1.1
(-1)
A 		1
(-1.3)
A 		2
C 1
(-2.5)
A 		2.7
(0.5)
A 		0.7
(-3)
A 		1.4
(-1.8)
A 		4.1
(3)
A 		1.1
(-2.3)
A 		3
avr 0.7
(-3) 		1.8
(-0.6) 		1
(-2.3) 		1
(-2.3) 		3.4
(3) 		1
(-2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5223
Sequence Type Exemplar sequence
Representative Public ID Y49F6B.3 NCBI
Target Description Y49F6B.3 /REP_DB=WormBase Gene ID /WP=CE25337 /TR=Q9N4U4 /GB=AAF60730.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062159 NCBI Caenorhabditis elegans Y49F6B.3 (Y49F6B.3) mRNA, complete cds. 11/11 None
Y49F6B.3 ENSEMBL cdna:known chromosome:CEL140:II:3491174:3492909:1 gene:Y49F6B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021097 3/11 Cross Hyb Matching Probes None
SNAP00000021098 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3491172-3492908(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6B.3
Entrez Gene 190079 Entrez gene
SwissProt Q9N4U4 EMBL-EBI
WormBase CE25337 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494560 Y49F6B.3 [Caenorhabditis elegans] gb|AAF60730.1| Hypothetical protein Y49F6B.3 [Caenorhabditis elegans] 1.0E-149
Sequence
Target Sequence 
>C. ELEGANS:184670_AT
gggaccaacatggactgctgaatgggttttaaaacatttcggaatacgggattggatggt
tctcgttaaacagctgactggccaggaagaaattgagaagctttgttttagaaaaaacca
ccaaaactactcaatcgatgaattcaagaagtttttcgaaggattcaaagtatcatgttt
atcaattattgatccatcatttaactctcatgcaaacttcgaaaccctagatattcacga
tgatagcacttacacactgaacgatgtattggtaatgaatagcccgaatatcttaatttc
tctgggaacactgtctgacgttgagctcaacctgtacttgaagcatttcattaaaggctc
aaatccgatgcttgagttcttgtttttgctttacgactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACCAACATGGACTGCTGAATGG 352 495 276 Antisense
GGTTCTCGTTAAACAGCTGACTGGC 223 507 333 Antisense
AAACCACCAAAACTACTCAATCGAT 580 125 390 Antisense
TGATCCATCATTTAACTCTCATGCA 17 567 465 Antisense
ACTCTCATGCAAACTTCGAAACCCT 142 101 479 Antisense
GATAGCACTTACACACTGAACGATG 533 423 517 Antisense
GCCCGAATATCTTAATTTCTCTGGG 113 285 557 Antisense
GGGAACACTGTCTGACGTTGAGCTC 59 495 579 Antisense
GTTGAGCTCAACCTGTACTTGAAGC 286 437 595 Antisense
AATCCGATGCTTGAGTTCTTGTTTT 544 167 637 Antisense
TCTTGTTTTTGCTTTACGACTTTGA 353 617 653 Antisense
Sequence Source Affymetrix Proprietary Database