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[184669_at]

Description Y47D9A.5 /REP_DB=WormBase Gene ID /WP=CE24354 /TR=Q9N4V5 /GB=AAF60649.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 5.2
(-2.9)
A 		46.5
(3)
A 		7.3
(-2.6)
A 		4.5
(-3)
A 		42
B 2.9
(-3)
A 		10.1
(3)
A 		5.1
(-1.2)
A 		5.2
(-1.1)
A 		7
C 13.9
(0)
A 		7.4
(-3)
A 		8.4
(-2.5)
A 		20.2
(3)
A 		13
avr 7.3
(-2.8) 		21.3
(3) 		6.9
(-3) 		10
(-1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.8
(-2.9)
A 		6.1
(-1.4)
A 		2.6
(-3)
A 		4.6
(-2.1)
A 		12.7
(1.6)
A 		15.9
(3)
A 		13
B 3
(-3)
A 		10.1
(0.9)
A 		13.9
(3)
A 		10.4
(1.1)
A 		4.2
(-2.3)
A 		6.4
(-1.1)
A 		11
C 5.7
(-3)
A 		26
(3)
A 		6.4
(-2.8)
A 		20.8
(1.5)
A 		11.7
(-1.2)
A 		9.9
(-1.8)
A 		20
avr 3.8
(-3) 		14.1
(3) 		7.6
(-0.8) 		11.9
(1.7) 		9.5
(0.3) 		10.7
(1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.9
(-2.2)
A 		10.1
(3)
A 		1.9
(-2.2)
A 		0.7
(-3)
A 		9
B 0.9
(-3)
A 		2.5
(3)
A 		1.2
(-1.9)
A 		1.1
(-2.3)
A 		2
C 4.6
(3)
A 		2.1
(-3)
A 		2.9
(-1.1)
A 		3.4
(0.1)
A 		3
avr 2.5
(-1.5) 		4.9
(3) 		2
(-2.4) 		1.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.2
(0)
A 		0.6
(-2.8)
A 		1.2
(-1.8)
A 		3.8
(2.8)
A 		3.9
(3)
A 		3
B 1
(-3)
A 		3.4
(3)
A 		3.4
(3)
A 		2.7
(1.3)
A 		1.7
(-1.3)
A 		2.4
(0.5)
A 		2
C 2.1
(-2.5)
A 		7.9
(3)
A 		1.6
(-3)
A 		4.2
(-0.5)
A 		3.8
(-0.9)
A 		3.3
(-1.4)
A 		6
avr 1.2
(-3) 		4.5
(3) 		1.9
(-1.7) 		2.7
(-0.3) 		3.1
(0.5) 		3.2
(0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1299
Sequence Type Exemplar sequence
Representative Public ID Y47D9A.5 NCBI
Target Description Y47D9A.5 /REP_DB=WormBase Gene ID /WP=CE24354 /TR=Q9N4V5 /GB=AAF60649.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058946 NCBI Caenorhabditis elegans Y47D9A.5 (Y47D9A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000009729 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4277742:4279577:-1 11/11 None
SNAP00000009715 ENSEMBL cdna:SNAP chromosome:CEL140:I:4277934:4279577:-1 11/11 None
Y47D9A.5.2 ENSEMBL cdna:known chromosome:CEL140:I:4277685:4279985:-1 gene:Y47D9A.5 11/11 None
Y47D9A.5.1 ENSEMBL cdna:known chromosome:CEL140:I:4277687:4279985:-1 gene:Y47D9A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4277933-4279985(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D9A.5
Entrez Gene 172031 Entrez gene
SwissProt Q9N4V5 EMBL-EBI
WormBase CE24354 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60649 Hypothetical protein Y47D9A.5 [Caenorhabditis elegans] ref|NP_491347.1| Y47D9A.5 [Caenorhabditis elegans] 0.0
blast CAE64518 Hypothetical protein CBG09256 [Caenorhabditis briggsae] 2.0E-39
blast CAE64518 Hypothetical protein CBG09256 [Caenorhabditis briggsae] 5.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491347.1 1 334-356
Y47D9A.5.2 1 334-356
Y47D9A.5.1 1 334-356
GENEFINDER00000009729 1 312-334
SNAP00000009715 1 312-334
Sequence
Target Sequence 
>C. ELEGANS:184669_AT
gagcattttatgattccgctcaaaacttttgtcatgctcagaaaatcgcttgatagtgga
aagcttgaacatttgtggaaatgtgataagatgtataacaataccatagctgtacagtac
gcactgaagggatttcaagaacttttttatgcttcactttacaaaagcctcccgagcccg
aatgctttaccaacacttaaacaaataggagtcagtcggcataaattgaagcaaaatgga
acactcgagccagaaaactcgtcagctcacatttgctcgtggatcgtgatggcgtttttc
gtcctacctttgattttttcgatttttgcagttttctgcttatgtgggaataactataga
actgagcttgggcacttcgctaatcccaacttgaaagatattgaaatgacattgctggaa
cgattgcaaaagaatgaaaatcctcaagttgaatccttgaagaaaccaaagctgccaagg
agcgagattattgacattgccatgaacacttcgtctcagatgggaaatatcacggatttg
ggttctgaaggaccaactggagcatcgtctatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATTTTATGATTCCGCTCAAAA 486 389 733 Antisense
GAACTTTTTTATGCTTCACTTTACA 289 349 871 Antisense
TTCACTTTACAAAAGCCTCCCGAGC 621 685 885 Antisense
AGAAAACTCGTCAGCTCACATTTGC 600 71 984 Antisense
AGCTCACATTTGCTCGTGGATCGTG 476 79 996 Antisense
GGATCGTGATGGCGTTTTTCGTCCT 597 505 1013 Antisense
AGAACTGAGCTTGGGCACTTCGCTA 453 73 1090 Antisense
CACTTCGCTAATCCCAACTTGAAAG 398 197 1105 Antisense
GAGCGAGATTATTGACATTGCCATG 303 387 1212 Antisense
ATTGCCATGAACACTTCGTCTCAGA 513 7 1228 Antisense
GGACCAACTGGAGCATCGTCTATGA 401 521 1282 Antisense
Sequence Source Affymetrix Proprietary Database