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[184667_at]

Description H27M09.3 /REP_DB=WormBase Gene ID /WP=CE23830 /TR=Q9N5K3 /GB=AAF39905.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 43.8
(-3)
P 		56.4
(1)
A 		51.9
(-0.4)
P 		62.8
(3)
A 		19
B 31.9
(-2.3)
A 		25.9
(-3)
A 		45.1
(-0.6)
A 		74.4
(3)
A 		49
C 47.3
(-3)
P 		71.7
(3)
P 		59.5
(0)
P 		66.1
(1.6)
A 		24
avr 41
(-3) 		51.3
(-0.7) 		52.2
(-0.5) 		67.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 37.8
(-2.5)
A 		23.2
(-3)
A 		35.5
(-2.6)
A 		37.9
(-2.5)
P 		125
(0.4)
P 		201.2
(3)
P 		178
B 24.2
(-2.9)
A 		47.3
(-2.3)
P 		37.5
(-2.6)
A 		22
(-3)
A 		133.8
(0.1)
P 		235.6
(3)
P 		214
C 11.8
(-3)
A 		20.4
(-2.8)
A 		89.8
(-1.1)
P 		47.7
(-2.1)
P 		115
(-0.5)
P 		261.3
(3)
P 		250
avr 24.6
(-3) 		30.3
(-2.8) 		54.3
(-2.1) 		35.9
(-2.7) 		124.6
(-0.1) 		232.7
(3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16
(3)
P 		12.2
(-0.4)
A 		13.6
(0.9)
P 		9.2
(-3)
A 		7
B 10.2
(-0.6)
A 		6.4
(-3)
A 		10.5
(-0.4)
A 		15.9
(3)
A 		10
C 15.6
(-0.2)
P 		20.6
(2.9)
P 		20.8
(3)
P 		11.1
(-3)
A 		10
avr 13.9
(0.7) 		13.1
(-0.9) 		15
(3) 		12.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 7
(-3)
A 		8.3
(-2.8)
A 		7.7
(-2.9)
A 		9.6
(-2.6)
P 		37.7
(1.4)
P 		49
(3)
P 		42
B 8.4
(-2.8)
A 		15.8
(-2.3)
P 		9.1
(-2.8)
A 		5.8
(-3)
A 		54.4
(0.6)
P 		87.8
(3)
P 		82
C 4.4
(-3)
A 		6.2
(-2.9)
A 		22.9
(-1.7)
P 		9.6
(-2.6)
P 		37.2
(-0.6)
P 		87.5
(3)
P 		83
avr 6.6
(-3) 		10.1
(-2.7) 		13.2
(-2.4) 		8.3
(-2.9) 		43.1
(0.2) 		74.8
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.810
Sequence Type Exemplar sequence
Representative Public ID H27M09.3 NCBI
Target Description H27M09.3 /REP_DB=WormBase Gene ID /WP=CE23830 /TR=Q9N5K3 /GB=AAF39905.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059559 NCBI Caenorhabditis elegans H27M09.3 (H27M09.3) mRNA, complete cds. 11/11 None
SNAP00000019136 ENSEMBL cdna:SNAP chromosome:CEL140:I:6855726:6857912:1 11/11 None
GENEFINDER00000019141 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6855726:6857912:1 11/11 None
H27M09.3 ENSEMBL cdna:known chromosome:CEL140:I:6855726:6857912:1 gene:H27M09.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6855656-6857843(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H27M09.3
Entrez Gene 172411 Entrez gene
SwissProt Q9N5K3 EMBL-EBI
WormBase CE23830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39905 Hypothetical protein H27M09.3 [Caenorhabditis elegans] ref|NP_491960.1| H27M09.3 [Caenorhabditis elegans] 0.0
blast CAE60580 Hypothetical protein CBG04214 [Caenorhabditis briggsae] 2.0E-85
Sequence
Target Sequence 
>C. ELEGANS:184667_AT
ggaagtacccgaggaaagtcccatggaagtcggtgagcaagaagaaattgagcaaccatc
tgtattcaaggacattctagccacggagcaggctgcactctcccaggaacaagaaccaga
gatcgttgagaagcaggcagacaatgatgttcagtttgttgatgatcaacaagtgggagc
acaactagatgtagaagacgaagaagaagtgatgagcgaaaacggttccaacaaaagcaa
taacttctcttttaacttttttgggaatagcaagggtacatcagcgggagaaggtggcgg
tgaaggcaacttcgactttaattttgacggaattggagcaggagatgatggttcgaacaa
tggtggttctactggagatctggatttccttaactatgacggagaggatgaaggaaaggg
ttcgggaaacactcaatccgatccgttcggatttgcatcaaatggtaacgcagctggtgg
aggtggagatggatcgttcaactttaactttgacggtgacggtgaaggcggagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTACCCGAGGAAAGTCCCATG 687 523 1251 Antisense
AAGTCCCATGGAAGTCGGTGAGCAA 697 157 1266 Antisense
GAGCAACCATCTGTATTCAAGGACA 161 391 1300 Antisense
TTCAAGGACATTCTAGCCACGGAGC 646 685 1315 Antisense
GCTGCACTCTCCCAGGAACAAGAAC 246 297 1342 Antisense
GTGGCGGTGAAGGCAACTTCGACTT 92 491 1544 Antisense
GGAGATCTGGATTTCCTTAACTATG 698 517 1624 Antisense
GATCCGTTCGGATTTGCATCAAATG 285 417 1690 Antisense
GCATCAAATGGTAACGCAGCTGGTG 86 307 1705 Antisense
GATGGATCGTTCAACTTTAACTTTG 350 405 1738 Antisense
GACGGTGACGGTGAAGGCGGAGCAA 53 375 1762 Antisense
Sequence Source Affymetrix Proprietary Database