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[184665_at]

Description Y18D10A.2 /REP_DB=WormBase Gene ID /WP=CE21398 /TR=Q9XW24 /GB=CAA22309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 3.6
(-3)
A 		3.8
(-2.9)
A 		6.2
(-1.9)
A 		17.8
(3)
A 		14
B 16.8
(-1.3)
A 		4.2
(-3)
A 		17.7
(-1.1)
A 		47.9
(3)
A 		44
C 12.6
(-2.3)
A 		19.9
(-1.2)
A 		7.7
(-3)
A 		48.2
(3)
A 		41
avr 11
(-2.6) 		9.3
(-3) 		10.5
(-2.7) 		38
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.3
(2.8)
A 		3.1
(-1.8)
A 		3.9
(-0.1)
A 		5.4
(3)
A 		3.4
(-1.1)
A 		2.5
(-3)
A 		3
B 12.8
(0.4)
A 		4.7
(-2.3)
A 		5.7
(-2)
A 		3.9
(-2.6)
A 		20.5
(3)
A 		2.6
(-3)
A 		18
C 6.7
(-1)
A 		5
(-1.7)
A 		3.5
(-2.3)
A 		1.9
(-3)
A 		3.7
(-2.2)
A 		16.2
(3)
A 		14
avr 8.3
(2) 		4.3
(-2.3) 		4.4
(-2.2) 		3.7
(-3) 		9.2
(3) 		7.1
(0.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.3
(-1.3)
A 		0.8
(-3)
A 		1.6
(-0.3)
A 		2.6
(3)
A 		2
B 5.4
(-0.1)
A 		1
(-3)
A 		4.1
(-1)
A 		10.2
(3)
A 		9
C 4.2
(-1.3)
A 		5.7
(0.3)
A 		2.7
(-3)
A 		8.1
(3)
A 		5
avr 3.6
(-1.5) 		2.5
(-3) 		2.8
(-2.6) 		7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1
(0)
A 		1.1
(0.8)
A 		0.9
(-0.8)
A 		1.4
(3)
A 		1
(0)
A 		0.6
(-3)
A 		1
B 4.5
(-0.1)
A 		1.6
(-2.5)
A 		1.4
(-2.7)
A 		1
(-3)
A 		8.3
(3)
A 		1
(-3)
A 		7
C 2.5
(-0.5)
A 		1.5
(-1.7)
A 		0.9
(-2.4)
A 		0.4
(-3)
A 		1.2
(-2)
A 		5.4
(3)
A 		5
avr 2.7
(1.2) 		1.4
(-1.8) 		1.1
(-2.5) 		0.9
(-3) 		3.5
(3) 		2.3
(0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1677
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.2 NCBI
Target Description Y18D10A.2 /REP_DB=WormBase Gene ID /WP=CE21398 /TR=Q9XW24 /GB=CAA22309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060839 NCBI Caenorhabditis elegans Y18D10A.2 (Y18D10A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000000466 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12814913:12817417:-1 11/11 None
Y18D10A.2 ENSEMBL cdna:known chromosome:CEL140:I:12814913:12817417:-1 gene:Y18D10A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000409 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12814843-12817348(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.2
Entrez Gene 189471 Entrez gene
SwissProt Q9XW24 EMBL-EBI
WormBase CE21398 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22309 Hypothetical protein Y18D10A.2 [Caenorhabditis elegans] ref|NP_493240.1| Y18D10A.2 [Caenorhabditis elegans] 1.0E-128
blast CAE63501 Hypothetical protein CBG07974 [Caenorhabditis briggsae] 4.0E-67
blast CAA85464 Hypothetical protein ZK669.3 [Caenorhabditis elegans] ref|NP_495669.1| ZK669.3 [Caenorhabditis elegans] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 1.1E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493240.1 1 13-35
Y18D10A.2 1 13-35
GENEFINDER00000000466 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:184665_AT
taatttcccactttttacaatgtcaaaatttctgcttttcatctcaatttcagcagtagc
aacagcttcagatttagtggaagtttttggtatttctagatgtccggatacatcgaaatt
tattcataatcaactggttccgttttatcagaattacaagggaaatctgtcggacgggct
taagcttgattttcatgcggtacctacaggtggacaccaggttgatggaaaatatgtaaa
ccgatgcctccacggagctctcgaatgtgctctcaacaaactacaaatgtgctcaaaaaa
gcacattaaacaagactggctcgtcacagccggatgtattcaaggaaaaacggcatattc
tgctggtttgaaatgtttgccggacactgaggaagggaaaattgttcaaaactgtgccga
atcggaggaaggagaatatttgttgaatgatgagaattcgtatcgttacaatgtggcgcc
acactcggcttggcttccatggattcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTCCCACTTTTTACAATGTCA 429 635 51 Antisense
AAAATTTCTGCTTTTCATCTCAATT 608 133 75 Antisense
AATCTGTCGGACGGGCTTAAGCTTG 447 165 214 Antisense
GCTTGATTTTCATGCGGTACCTACA 147 301 234 Antisense
GCGGTACCTACAGGTGGACACCAGG 470 293 247 Antisense
TATGTAAACCGATGCCTCCACGGAG 572 651 283 Antisense
CACGGAGCTCTCGAATGTGCTCTCA 276 199 301 Antisense
ACTGGCTCGTCACAGCCGGATGTAT 459 95 365 Antisense
GAAATGTTTGCCGGACACTGAGGAA 485 361 420 Antisense
GTATCGTTACAATGTGGCGCCACAC 310 455 510 Antisense
TCGGCTTGGCTTCCATGGATTCAAG 674 605 535 Antisense
Sequence Source Affymetrix Proprietary Database