[Home] | [Total List]

[184664_at]

Description T15B12.1 /REP_DB=WormBase Gene ID /WP=CE01403 /TR=Q22517 /GB=AAA21559.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 22      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 374.4
(2.5)
P 		398.7
(3)
P 		333.8
(1.6)
P 		127.2
(-3)
P 		272
B 423.5
(3)
P 		331.6
(0.8)
P 		323.2
(0.6)
P 		169.8
(-3)
P 		254
C 429.5
(3)
P 		327.1
(1)
P 		388.1
(2.2)
P 		123.2
(-3)
P 		306
avr 409.1
(3) 		352.5
(1.7) 		348.4
(1.6) 		140.1
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 415.4
(3)
P 		314.5
(0.8)
P 		340.7
(1.4)
P 		210.2
(-1.5)
P 		318.9
(0.9)
P 		143.4
(-3)
P 		272
B 308.2
(2.1)
P 		338.1
(2.9)
P 		343.7
(3)
P 		163.3
(-1.4)
P 		210.6
(-0.3)
P 		100.2
(-3)
P 		244
C 330.9
(3)
P 		301.8
(2.1)
P 		307.6
(2.3)
P 		248.5
(0.5)
P 		237.2
(0.1)
P 		136.8
(-3)
P 		194
avr 351.5
(3) 		318.1
(2.1) 		330.7
(2.4) 		207.3
(-0.9) 		255.6
(0.4) 		126.8
(-3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 136.3
(3)
P 		86.5
(0.5)
P 		87.3
(0.5)
P 		18.6
(-3)
P 		118
B 135
(3)
P 		81.9
(-0.2)
P 		74.9
(-0.6)
P 		36.2
(-3)
P 		99
C 142.2
(3)
P 		94
(0.6)
P 		135.3
(2.7)
P 		20.8
(-3)
P 		121
avr 137.8
(3) 		87.5
(0.3) 		99.2
(0.9) 		25.2
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 76.6
(0.3)
P 		111.8
(3)
P 		74.2
(0.1)
P 		53.3
(-1.6)
P 		96.2
(1.8)
P 		34.9
(-3)
P 		77
B 107.2
(2.6)
P 		112.5
(3)
P 		83.5
(0.7)
P 		43.2
(-2.5)
P 		85.6
(0.9)
P 		37.4
(-3)
P 		75
C 122.7
(3)
P 		92.1
(0.6)
P 		78.3
(-0.5)
P 		50
(-2.7)
P 		76.8
(-0.6)
P 		45.8
(-3)
P 		77
avr 102.2
(2.7) 		105.5
(3) 		78.7
(0.6) 		48.8
(-2.1) 		86.2
(1.2) 		39.4
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8025
Sequence Type Exemplar sequence
Representative Public ID T15B12.1 NCBI
Target Description T15B12.1 /REP_DB=WormBase Gene ID /WP=CE01403 /TR=Q22517 /GB=AAA21559.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065730 NCBI Caenorhabditis elegans T15B12.1 (T15B12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038710 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5294598:5297785:1 11/11 None
T15B12.1 ENSEMBL cdna:known chromosome:CEL140:III:5288184:5298309:1 gene:T15B12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038708 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5294611-5297784(+) 100.0 100.0
Public Domain and Genome References
Ensembl T15B12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498131 T15B12.1 [Caenorhabditis elegans] gb|AAA21559.1| Hypothetical protein T15B12.1a [Caenorhabditis elegans] 1.0E-128
blast CAE73678 Hypothetical protein CBG21187 [Caenorhabditis briggsae] 1.0E-104
blast XP_797893 PREDICTED: similar to smoothelin isoform c [Strongylocentrotus purpuratus] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 9.6E-35
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 9.6E-35
Sequence
Target Sequence 
>C. ELEGANS:184664_AT
cacaaatcccgactttcactgaaacttgggggaaaagaaaatttaacaaagccaactttg
atcttatcgaaaagtgggccgcctactccaatcagacatgttgctcccactatcacccac
acacttccaaatcgtccaaatatcggaggaatcgccagtttaaagtccgaaccaaaaatg
tctcgtccgaatatgttcaagcaaatggaaaaggttgaatctaacacaactacaactgct
ccaccacgtcagcttaatccgaattccataaaggatgcacttttgcgttggattcaaaat
agagttgctggttacccgaacgtgaatgtaacaaacttctcctcatcatgggctgatggc
atggcattctgtgctcttattcatcggtttgctccaaattcattcgacttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAAATCCCGACTTTCACTGAAAC 156 195 88 Antisense
ATCGAAAAGTGGGCCGCCTACTCCA 304 33 153 Antisense
ACTCCAATCAGACATGTTGCTCCCA 158 99 172 Antisense
ACACACTTCCAAATCGTCCAAATAT 569 109 206 Antisense
ATCTAACACAACTACAACTGCTCCA 696 31 306 Antisense
CACGTCAGCTTAATCCGAATTCCAT 246 197 332 Antisense
GAGTTGCTGGTTACCCGAACGTGAA 110 397 389 Antisense
GAATGTAACAAACTTCTCCTCATCA 221 331 411 Antisense
ATGGCATGGCATTCTGTGCTCTTAT 440 51 443 Antisense
TGTGCTCTTATTCATCGGTTTGCTC 422 557 457 Antisense
TGCTCCAAATTCATTCGACTTCTCA 118 583 477 Antisense
Sequence Source Affymetrix Proprietary Database