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[184663_at]

Description F52C6.11 /REP_DB=WormBase Gene ID /WP=CE10822 /TR=O44818 /GB=AAB94977.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 08      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 51.2
(-2.6)
A 		48.3
(-3)
A 		64
(-0.7)
A 		88.7
(3)
P 		40
B 39.6
(-3)
A 		60.4
(-1)
A 		91.7
(2.1)
A 		100.8
(3)
P 		61
C 54.4
(-1.9)
A 		39.4
(-2.6)
A 		30
(-3)
M 		158.1
(3)
P 		128
avr 48.4
(-3) 		49.4
(-2.9) 		61.9
(-1.8) 		115.9
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 84
(-2)
A 		37.9
(-3)
A 		86.1
(-1.9)
A 		113.9
(-1.3)
P 		245.2
(1.5)
P 		312.8
(3)
P 		275
B 40.2
(-3)
A 		51.6
(-2.8)
A 		53.5
(-2.7)
A 		146.2
(-0.8)
P 		248.2
(1.4)
P 		323.6
(3)
P 		283
C 31.7
(-3)
A 		84.5
(-1.7)
P 		37.3
(-2.9)
A 		144.1
(-0.3)
P 		214.8
(1.5)
P 		278.5
(3)
P 		247
avr 52
(-3) 		58
(-2.9) 		59
(-2.8) 		134.7
(-1) 		236.1
(1.4) 		305
(3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 18.6
(3)
A 		10.5
(-3)
A 		16.7
(1.6)
A 		13
(-1.1)
P 		8
B 12.6
(-3)
A 		14.9
(-1.4)
A 		21.3
(2.9)
A 		21.5
(3)
P 		9
C 18
(-0.2)
A 		11.3
(-2.7)
A 		10.5
(-3)
M 		26.7
(3)
P 		16
avr 16.4
(0.1) 		12.2
(-3) 		16.2
(-0.1) 		20.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 15.5
(-2.8)
A 		13.5
(-3)
A 		18.8
(-2.5)
A 		28.9
(-1.5)
P 		74
(2.8)
P 		76.2
(3)
P 		63
B 14
(-2.9)
A 		17.2
(-2.8)
A 		13
(-3)
A 		38.7
(-1.6)
P 		100.8
(1.9)
P 		120.7
(3)
P 		108
C 11.8
(-2.8)
A 		25.8
(-1.8)
P 		9.5
(-3)
A 		29
(-1.6)
P 		69.5
(1.3)
P 		93.2
(3)
P 		84
avr 13.8
(-3) 		18.8
(-2.6) 		13.8
(-3) 		32.2
(-1.7) 		81.4
(1.9) 		96.7
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4267
Sequence Type Exemplar sequence
Representative Public ID F52C6.11 NCBI
Target Description F52C6.11 /REP_DB=WormBase Gene ID /WP=CE10822 /TR=O44818 /GB=AAB94977.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061724 NCBI Caenorhabditis elegans F52C6.11 (F52C6.11) mRNA, complete cds. 11/11 None
SNAP00000005723 ENSEMBL cdna:SNAP chromosome:CEL140:II:1921619:1922700:-1 11/11 None
GENEFINDER00000005732 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1921619:1922746:-1 11/11 None
F52C6.11 ENSEMBL cdna:known chromosome:CEL140:II:1921619:1922746:-1 gene:F52C6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1921617-1922745(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-2
Ensembl F52C6.11
Entrez Gene 186093 Entrez gene
SwissProt O44818 EMBL-EBI
WormBase CE35974 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 1.0E-172
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 1.0E-148
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 1.0E-102
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 2.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.2E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.4E-37
Pfam IPR002083 EMBL-EBI MATH 9.4E-31
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.4E-37
Sequence
Target Sequence 
>C. ELEGANS:184663_AT
gagtgggactcattgctgaaggattatctaatcgatgacgtcatcatcattgaagttgct
gttaaaatcaagaatatgtctggaattccgaagaaaaagctcaaaagcttcgagagatcg
aatgaagaattttcagatgtgattttggcagttggagataaaaagttcttcgttctccga
aaattcctggcttcccactctacatatttcgagactctgctgctcggaaattttgcagaa
gctgacaaatcagaagtcaaactccaggacatcaattccaccgattttcagaatctcatg
gaagttcggtatggagaatatgctattgatgaggaaacagtggacggaattctgcacttg
gctcacttgtacgatatgccgtttccgattaaaagatgtgaggaatttcttgtcgattca
tctgaaaaatccacgaaggagaagcttaaagtcgccaagaagtatcagctggagaatttg
aaggcgtcttgtctcgcaaaaatcaatacgttggaggagatcaaagcggcattggctgga
gatttggatgaaatggatccatctgtggttcatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGGACTCATTGCTGAAGGATT 63 401 259 Antisense
GACGTCATCATCATTGAAGTTGCTG 646 377 295 Antisense
CTTCCCACTCTACATATTTCGAGAC 100 221 449 Antisense
TACATATTTCGAGACTCTGCTGCTC 199 645 459 Antisense
AACTCCAGGACATCAATTCCACCGA 366 141 518 Antisense
TGGACGGAATTCTGCACTTGGCTCA 382 547 599 Antisense
GCACTTGGCTCACTTGTACGATATG 486 315 612 Antisense
GTACGATATGCCGTTTCCGATTAAA 649 455 627 Antisense
GAGGAATTTCTTGTCGATTCATCTG 553 403 658 Antisense
ATTTGAAGGCGTCTTGTCTCGCAAA 343 17 734 Antisense
AATGGATCCATCTGTGGTTCATGCT 172 163 810 Antisense
Sequence Source Affymetrix Proprietary Database