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[184662_at]

Description Y46G5A.29 /REP_DB=WormBase Gene ID /WP=CE24299 /TR=Q9U2D5 /GB=CAB60377.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 15.2
(-3)
A 		396
(1.8)
P 		494.1
(3)
P 		25.5
(-2.9)
A 		479
B 35.8
(-3)
A 		379.1
(1.4)
P 		505.6
(3)
P 		65.5
(-2.6)
A 		470
C 20.8
(-3)
A 		306.9
(0.2)
P 		557.5
(3)
P 		70.6
(-2.4)
A 		537
avr 23.9
(-3) 		360.7
(1.1) 		519.1
(3) 		53.9
(-2.6) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 566
1 2 3 4 5 6 range
A 69.7
(-3)
A 		165.1
(-1.5)
P 		119.7
(-2.2)
P 		453.4
(3)
P 		431
(2.6)
P 		127.4
(-2.1)
P 		384
B 31.1
(-3)
A 		178.6
(-0.7)
P 		146
(-1.2)
P 		366.4
(2.2)
P 		419.7
(3)
P 		93.6
(-2)
P 		389
C 27.7
(-3)
A 		126.7
(-1.9)
P 		249.2
(-0.7)
P 		313.3
(0)
P 		593.3
(3)
P 		122.3
(-2)
P 		566
avr 42.8
(-3) 		156.8
(-1.4) 		171.6
(-1.2) 		377.7
(1.6) 		481.3
(3) 		114.4
(-2) 		439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 5.6
(-2.9)
A 		86
(0.9)
P 		129.2
(3)
P 		3.7
(-3)
A 		126
B 11.4
(-3)
A 		93.6
(1.7)
P 		117.2
(3)
P 		13.9
(-2.9)
A 		106
C 6.9
(-3)
A 		88.2
(-0.4)
P 		194.3
(3)
P 		11.9
(-2.8)
A 		187
avr 8
(-3) 		89.3
(0.5) 		146.9
(3) 		9.8
(-2.9) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 12.8
(-3)
A 		58.7
(-0.7)
P 		26.1
(-2.3)
P 		115
(2.2)
P 		130.1
(3)
P 		31
(-2.1)
P 		117
B 10.8
(-3)
A 		59.4
(-1.2)
P 		35.5
(-2.1)
P 		97
(0.2)
P 		170.5
(3)
P 		34.9
(-2.1)
P 		160
C 10.3
(-3)
A 		38.7
(-2.1)
P 		63.4
(-1.2)
P 		63
(-1.3)
P 		192
(3)
P 		40.9
(-2)
P 		182
avr 11.3
(-3) 		52.3
(-1.4) 		41.7
(-1.8) 		91.7
(0.2) 		164.2
(3) 		35.6
(-2) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3159
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.29 NCBI
Target Description Y46G5A.29 /REP_DB=WormBase Gene ID /WP=CE24299 /TR=Q9U2D5 /GB=CAB60377.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064333 NCBI Caenorhabditis elegans Y46G5A.29 (Y46G5A.29) mRNA, complete cds. 11/11 None
GENEFINDER00000039019 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12854770:12861743:1 11/11 None
Y46G5A.29 ENSEMBL cdna:known chromosome:CEL140:II:12856092:12861907:1 gene:Y46G5A.29 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039012 4/11 Cross Hyb Matching Probes None
SNAP00000039013 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12856113-12861740(+) 92.33 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.29
Entrez Gene 174922 Entrez gene
SwissProt Q9U2D5 EMBL-EBI
WormBase CE37286 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60377 Hypothetical protein Y46G5A.29 [Caenorhabditis elegans] ref|NP_496734.3| Y46G5A.29 [Caenorhabditis elegans] 0.0
blast CAE71486 Hypothetical protein CBG18408 [Caenorhabditis briggsae] 0.0
blast XP_785834 PREDICTED: similar to notch1 preproprotein [Strongylocentrotus purpuratus] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.2E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.6E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 2.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 9.4E-9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.2E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 3.6E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 2.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 9.4E-9
Sequence
Target Sequence 
>C. ELEGANS:184662_AT
ctcccactacagcctattctgatgccattcgcatttttgctcggtgaatgggagtcgacg
atcaagggatggaataatcacacaaccgactacccggcagacatggatggaatgatttac
aacgagacaatcacgttttcggttgctccatcattgagtttcgggactccgttcgtcaat
tacacagccacaatgactagccttgacgatccatccaacatccatcaatacaacggattc
ctcaccatacaacaatacaaagacaacgagaactctaccgatcgcggagccctcaccaca
gtcagtaacaccgggctcattatgatcgaagagggagatattctggacgagaaatcctca
tccgaaggtgctccaacattaatgctgactccaacttatcaattctacaagtcggagaca
aagaatcctgcgcggcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCACTACAGCCTATTCTGATGC 9 233 2077 Antisense
GGAATAATCACACAACCGACTACCC 136 527 2147 Antisense
CCGACTACCCGGCAGACATGGATGG 636 263 2162 Antisense
AGACAATCACGTTTTCGGTTGCTCC 36 73 2201 Antisense
GGACTCCGTTCGTCAATTACACAGC 634 523 2240 Antisense
AATGACTAGCCTTGACGATCCATCC 116 165 2268 Antisense
TACAACGGATTCCTCACCATACAAC 79 643 2305 Antisense
CAACGAGAACTCTACCGATCGCGGA 323 187 2340 Antisense
TCACCACAGTCAGTAACACCGGGCT 690 623 2369 Antisense
GAAATCCTCATCCGAAGGTGCTCCA 111 363 2427 Antisense
GAGACAAAGAATCCTGCGCGGCATC 216 393 2491 Antisense
Sequence Source Affymetrix Proprietary Database