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[184661_at]

Description Y43F8C.11 /REP_DB=WormBase Gene ID /WP=CE21909 /TR=Q9XWN8 /GB=CAA21613.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 20      4grp_highest_8_8 > 0      4grp_high_8_8 > 43      6grp_highest_nonorm > 81      6grp_total > 40      4grp_total > 44      6grp_highest_sub > 01_02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 249.4
(-3)
P 		318.7
(3)
P 		271.8
(-1.1)
P 		292.9
(0.8)
P 		69
B 272.7
(0.1)
P 		322.3
(3)
P 		261.9
(-0.5)
P 		219.6
(-3)
P 		103
C 350
(3)
P 		309
(1)
P 		261.4
(-1.2)
P 		224.4
(-3)
P 		126
avr 290.7
(0.8) 		316.7
(3) 		265
(-1.4) 		245.6
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 255.3
(2.5)
P 		261.9
(3)
P 		261.1
(2.9)
P 		234.7
(1)
P 		178.4
(-3)
P 		187.2
(-2.4)
P 		84
B 266.2
(0.1)
P 		310.9
(1.6)
P 		355.4
(3)
P 		213.6
(-1.6)
P 		169.5
(-3)
P 		178.3
(-2.7)
P 		186
C 264.8
(0.6)
P 		311.1
(2.6)
P 		261.5
(0.5)
P 		320.7
(3)
P 		178.9
(-3)
P 		229
(-0.9)
P 		142
avr 262.1
(1.4) 		294.6
(3) 		292.7
(2.9) 		256.3
(1.1) 		175.6
(-3) 		198.2
(-1.9) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 90.8
(3)
P 		69.2
(0.3)
P 		71.1
(0.5)
P 		42.9
(-3)
P 		48
B 87
(3)
P 		79.6
(1.9)
P 		60.7
(-0.9)
P 		46.8
(-3)
P 		40
C 115.8
(3)
P 		88.8
(0.9)
P 		91.1
(1.1)
P 		37.8
(-3)
P 		78
avr 97.9
(3) 		79.2
(1) 		74.3
(0.4) 		42.5
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 47.1
(-2.8)
P 		93.2
(3)
P 		56.9
(-1.6)
P 		59.5
(-1.2)
P 		53.8
(-2)
P 		45.6
(-3)
P 		48
B 92.6
(1.6)
P 		103.5
(3)
P 		86.3
(0.8)
P 		56.6
(-3)
P 		68.8
(-1.4)
P 		66.5
(-1.7)
P 		47
C 98.1
(3)
P 		94.9
(2.5)
P 		66.6
(-1.7)
P 		64.5
(-2)
P 		57.9
(-3)
P 		76.7
(-0.2)
P 		40
avr 79.3
(0.1) 		97.2
(3) 		69.9
(-1.4) 		60.2
(-3) 		60.2
(-3) 		62.9
(-2.6) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14172
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.11 NCBI
Target Description Y43F8C.11 /REP_DB=WormBase Gene ID /WP=CE21909 /TR=Q9XWN8 /GB=CAA21613.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075410 NCBI Caenorhabditis elegans Y43F8C.11 (Y43F8C.11) mRNA, complete cds. 11/11 None
GENEFINDER00000039635 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19672832:19690766:1 11/11 None
Y43F8C.11 ENSEMBL cdna:known chromosome:CEL140:V:19672832:19673934:1 gene:Y43F8C.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19672831-19673934(+) 99.66 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.11
Entrez Gene 189879 Entrez gene
SwissProt Q9XWN8 EMBL-EBI
WormBase CE21909 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21622 Hypothetical protein Y43F8C.12 [Caenorhabditis elegans] ref|NP_507812.2| Multidrug Resistance Protein family member (mrp-7) [Caenorhabditis elegans] 0.0
blast CAE56716 Hypothetical protein CBG24503 [Caenorhabditis briggsae] 0.0
blast CAE63808 Hypothetical protein CBG08354 [Caenorhabditis briggsae] 0.0
blast CAA21613 Hypothetical protein Y43F8C.11 [Caenorhabditis elegans] ref|NP_507811.1| Y43F8C.11 [Caenorhabditis elegans] 1.0E-50
blast CAE61741 Hypothetical protein CBG05693 [Caenorhabditis briggsae] 4.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001140 EMBL-EBI ABC transporter, transmembrane region 2.5E-29
Pfam IPR003439 EMBL-EBI ABC transporter 1.3E-30
Pfam IPR003439 EMBL-EBI ABC transporter 1.3E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507811.1 1 36-58
Y43F8C.11 1 36-58
GENEFINDER00000039635 7 35-57,254-276,296-318,328-350,357-379,399-421,659-681
Sequence
Target Sequence 
>C. ELEGANS:184661_AT
atggatttccgcgaggtctggatgaacactgaagttggtgaggagacgcctcacgtgctc
gctgcaaaaacttgtgctggaaatttgaaaatcgccgaggagaattgtatgtatctcctg
ggcatctcgatcttcctgctgatcctcaacatcgtcaccatcgccttctacaatcgccgc
cacgtcatcaaattctaccgtacccgcttccaaccgattccccactcggaaaccgcttca
tcagtttttcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATTTCCGCGAGGTCTGGATGA 386 51 13 Antisense
GCGAGGTCTGGATGAACACTGAAGT 70 289 23 Antisense
TGGTGAGGAGACGCCTCACGTGCTC 258 553 48 Antisense
CTCACGTGCTCGCTGCAAAAACTTG 532 227 62 Antisense
GCTCGCTGCAAAAACTTGTGCTGGA 481 299 69 Antisense
GAAAATCGCCGAGGAGAATTGTATG 18 355 99 Antisense
ATTGTATGTATCTCCTGGGCATCTC 441 5 116 Antisense
CCGCCACGTCATCAAATTCTACCGT 199 261 189 Antisense
ACGTCATCAAATTCTACCGTACCCG 585 93 194 Antisense
CCCACTCGGAAACCGCTTCATCAGT 43 259 233 Antisense
GAAACCGCTTCATCAGTTTTTCGTG 246 359 241 Antisense
Sequence Source Affymetrix Proprietary Database