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[184660_at]

Description Y63D3A.10 /REP_DB=WormBase Gene ID /WP=CE20332 /TR=Q9XWG4 /GB=CAA21706.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 8.4
(-3)
A 		30.8
(-1.1)
A 		34.9
(-0.7)
A 		77.5
(3)
A 		69
B 9.8
(-3)
A 		12.1
(-2.8)
A 		33.6
(-0.7)
A 		71.1
(3)
A 		61
C 37.1
(-1.1)
A 		44.9
(-0.6)
A 		6.5
(-3)
A 		102.7
(3)
P 		96
avr 18.4
(-3) 		29.3
(-2) 		25
(-2.4) 		83.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 10.5
(-2.5)
A 		7.6
(-3)
A 		33.4
(1.5)
A 		16.2
(-1.5)
A 		41.8
(3)
A 		13.4
(-2)
A 		34
B 20.5
(-0.1)
A 		25
(0.6)
A 		1.7
(-3)
A 		22.5
(0.2)
A 		40.3
(3)
A 		7.5
(-2.1)
A 		39
C 1.8
(-3)
A 		29.8
(1)
A 		39.2
(2.4)
A 		25.8
(0.5)
A 		43.3
(3)
A 		27.8
(0.8)
A 		42
avr 10.9
(-3) 		20.8
(-1.1) 		24.8
(-0.3) 		21.5
(-0.9) 		41.8
(3) 		16.2
(-2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.1
(-3)
A 		6.7
(-0.4)
A 		9.1
(1.4)
A 		11.3
(3)
A 		8
B 3.1
(-3)
A 		3
(-3)
A 		7.8
(-0.6)
A 		15.2
(3)
A 		12
C 12.3
(1)
A 		12.9
(1.2)
A 		2.3
(-3)
A 		17.3
(3)
P 		15
avr 6.2
(-3) 		7.5
(-2.1) 		6.4
(-2.9) 		14.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.7
(-2.6)
A 		7.3
(0)
A 		4.1
(-1.8)
A 		12.6
(3)
A 		3.3
(-2.2)
A 		11
B 7.1
(-0.5)
A 		8.3
(-0)
A 		0.4
(-3)
A 		6
(-0.9)
A 		16.4
(3)
A 		2.8
(-2.1)
A 		16
C 0.7
(-3)
A 		9.1
(0.8)
A 		10
(1.2)
A 		5.2
(-1)
A 		14
(3)
A 		9.3
(0.9)
A 		13
avr 3.2
(-3) 		6.7
(-1.1) 		5.9
(-1.5) 		5.1
(-2) 		14.3
(3) 		5.1
(-2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.748
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.10 NCBI
Target Description Y63D3A.10 /REP_DB=WormBase Gene ID /WP=CE20332 /TR=Q9XWG4 /GB=CAA21706.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061056 NCBI Caenorhabditis elegans Y63D3A.10 (Y63D3A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000002954 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14092641:14095469:1 11/11 None
Y63D3A.10 ENSEMBL cdna:known chromosome:CEL140:I:14092641:14095469:1 gene:Y63D3A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002943 4/11 Cross Hyb Matching Probes None
SNAP00000040930 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040936 2/11 Cross Hyb Matching Probes None
SNAP00000018824 3/11 Cross Hyb Matching Probes None
SNAP00000027316 3/11 Cross Hyb Matching Probes None
SNAP00000036836 3/11 Cross Hyb Matching Probes None
GENEFINDER00000036840 3/11 Cross Hyb Matching Probes None
SNAP00000024716 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14092571-14095400(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.10
Entrez Gene 173274 Entrez gene
SwissProt Q9XWG4 EMBL-EBI
WormBase CE20332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21706 Hypothetical protein Y63D3A.10 [Caenorhabditis elegans] ref|NP_493457.1| Y63D3A.10 [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-5
Sequence
Target Sequence 
>C. ELEGANS:184660_AT
gattgcatcaatcacgttctcgaagtttataaaatatcaaagttacatacattgaaagtt
attggagccatcaacaaccctcagaatttactgaaaataatcggaaagttggatctcaaa
gttctatggatatttttcaattttagtgaaaacagcacaaccatttcggtctatcgcgag
atcctaaatcaccttggtgctcgctgtgatgttagatctctcagacgaggattctatgac
aaagagccgcagaagtcattctttcttctgcgtctctcgctctcatacgctctctcacaa
gagccacactcgcgccccacagcgacattagctgcgcggcgactcaagcgacgacaggat
acgcagccattggacgccaccacttcagtcttgatgctgcgctcgtgccgaacggtcggg
cgtggcacttctctcccgacgcatcccccattttcctttgtaattgcccctcactattat
tcatgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCATCAATCACGTTCTCGAAG 595 433 319 Antisense
TATTGGAGCCATCAACAACCCTCAG 522 665 378 Antisense
AGCACAACCATTTCGGTCTATCGCG 288 75 472 Antisense
GAGATCCTAAATCACCTTGGTGCTC 486 393 496 Antisense
GGTGCTCGCTGTGATGTTAGATCTC 392 501 514 Antisense
GAGCCGCAGAAGTCATTCTTTCTTC 38 387 562 Antisense
ACATTAGCTGCGCGGCGACTCAAGC 237 103 643 Antisense
GACAGGATACGCAGCCATTGGACGC 342 369 671 Antisense
ACCACTTCAGTCTTGATGCTGCGCT 526 83 697 Antisense
CGTGCCGAACGGTCGGGCGTGGCAC 582 245 722 Antisense
TTGCCCCTCACTATTATTCATGTAC 493 701 782 Antisense
Sequence Source Affymetrix Proprietary Database